Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,071,179 – 12,071,299 |
Length | 120 |
Max. P | 0.677369 |
Location | 12,071,179 – 12,071,299 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -24.75 |
Consensus MFE | -24.75 |
Energy contribution | -24.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 1.00 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12071179 120 + 27905053 UCUUCCCAGAGCCAAAGGGCAUUUCCCGUUCGUUGCAGUCUUGAUUCUGAGCGCCUUAUCUUUAUUCCUUUUCUUGGUCUGCUUUUUUAAUUGUUCUUUAUGGUCAUAUGCUGCUCUGAA ......((((((.....(((((...((((.....(((((..(((....(((((((....................)))..))))..)))))))).....))))....))))))))))).. ( -24.75) >DroSec_CAF1 7708 120 + 1 UCUUCCCAGAGCCAAAGGGCAUUUCCCGUUCGUUGCAGUCUUGAUUCUGAGCGCCUUAUCUUUAUUCCUUUUCUUGGUCUGCUUUUUUAAUUGUUCUUUAUGGUUAUAUGCUGCUCUGAA ......((((((.....(((((...((((.....(((((..(((....(((((((....................)))..))))..)))))))).....))))....))))))))))).. ( -24.75) >DroSim_CAF1 8144 120 + 1 UCUUCCCAGAGCCAAAGGGCAUUUCCCGUUCGUUGCAGUCUUGAUUCUGAGCGCCUUAUCUUUAUUCCUUUUCUUGGUCUGCUUUUUUAAUUGUUCUUUAUGGUUAUAUGCUGCUCUGAA ......((((((.....(((((...((((.....(((((..(((....(((((((....................)))..))))..)))))))).....))))....))))))))))).. ( -24.75) >consensus UCUUCCCAGAGCCAAAGGGCAUUUCCCGUUCGUUGCAGUCUUGAUUCUGAGCGCCUUAUCUUUAUUCCUUUUCUUGGUCUGCUUUUUUAAUUGUUCUUUAUGGUUAUAUGCUGCUCUGAA ......((((((.....(((((...((((.....(((((..(((....(((((((....................)))..))))..)))))))).....))))....))))))))))).. (-24.75 = -24.75 + 0.00)
Location | 12,071,179 – 12,071,299 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -23.70 |
Energy contribution | -23.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 1.00 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12071179 120 - 27905053 UUCAGAGCAGCAUAUGACCAUAAAGAACAAUUAAAAAAGCAGACCAAGAAAAGGAAUAAAGAUAAGGCGCUCAGAAUCAAGACUGCAACGAACGGGAAAUGCCCUUUGGCUCUGGGAAGA ((((((((..............................((((.((.......))......(((............)))....))))..((((.(((.....))))))))))))))).... ( -23.70) >DroSec_CAF1 7708 120 - 1 UUCAGAGCAGCAUAUAACCAUAAAGAACAAUUAAAAAAGCAGACCAAGAAAAGGAAUAAAGAUAAGGCGCUCAGAAUCAAGACUGCAACGAACGGGAAAUGCCCUUUGGCUCUGGGAAGA ((((((((..............................((((.((.......))......(((............)))....))))..((((.(((.....))))))))))))))).... ( -23.70) >DroSim_CAF1 8144 120 - 1 UUCAGAGCAGCAUAUAACCAUAAAGAACAAUUAAAAAAGCAGACCAAGAAAAGGAAUAAAGAUAAGGCGCUCAGAAUCAAGACUGCAACGAACGGGAAAUGCCCUUUGGCUCUGGGAAGA ((((((((..............................((((.((.......))......(((............)))....))))..((((.(((.....))))))))))))))).... ( -23.70) >consensus UUCAGAGCAGCAUAUAACCAUAAAGAACAAUUAAAAAAGCAGACCAAGAAAAGGAAUAAAGAUAAGGCGCUCAGAAUCAAGACUGCAACGAACGGGAAAUGCCCUUUGGCUCUGGGAAGA ((((((((..............................((((.((.......))......(((............)))....))))..((((.(((.....))))))))))))))).... (-23.70 = -23.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:59 2006