Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,733,537 – 1,733,739 |
Length | 202 |
Max. P | 0.993247 |
Location | 1,733,537 – 1,733,643 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -15.60 |
Energy contribution | -16.13 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -2.30 |
Structure conservation index | 0.58 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1733537 106 + 27905053 --CGCCCCGCUCUCCCUAUAUAAACGAAAGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAG----CUCGACACAAAACACAGCGUGGCGAGAGGAGC --.((.((.(((.(((........(....)..((((((......((((.....))))....(((((.((......)----)..)))))....))))))).)).))).)).)) ( -34.90) >DroPse_CAF1 36482 108 + 1 --UCUCUCGCUUGCUGUAUAUAAACGAAAGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAGCCAACUCGACACAAAACACAGCGUAGCA-GAAGAG- --...(((..((((((........(....)..((((((......((((.....))))....(((((((.((....))))....)))))....)))))).)))))-)..)))- ( -30.80) >DroEre_CAF1 41729 96 + 1 --CGUCCCGCUCGCCCUAUAUAAACGAAAGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAG----CUCGGCACAAAACCCA----------AGGAGC --......((((............(....)......((((....((((.....))))))))(((((.((......)----)..)))))........----------..)))) ( -18.90) >DroWil_CAF1 37760 100 + 1 ------------UCUCUAUAUAAACGAAAGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAGCCAACUCGACACAAAACACAGGACAGAGGCAGCAGC ------------(((((.......(....)...(((((......((((.....))))....(((((((.((....))))....)))))....)))))...)))))....... ( -22.40) >DroAna_CAF1 38322 92 + 1 -----------UUCCCUAUACAAACGA-AGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAG----CUCGACACACAACACAGCG----GAGAGAAGC -----------((((.....(....).-....((((((......((((.....))))....(((((.((......)----)..)))))....)))))))----)))...... ( -23.30) >DroPer_CAF1 37023 110 + 1 UUUCUCUCUCUUGCUGUAUAUAAACGAAAGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAGCCAACUCGACACAAAACACAGCGUAGCA-GAAGAG- .....((((..(((((........(....)..((((((......((((.....))))....(((((((.((....))))....)))))....)))))).)))))-..))))- ( -32.30) >consensus ____UC_CGCUUGCCCUAUAUAAACGAAAGAAGCUGUGAAACUUAUGCAAAUUGCAUUUCAGUGUCUGCGCAAAAG____CUCGACACAAAACACAGCGUAGCG_GAGGAGC ........................(....)..((((((......((((.....))))....(((((.................)))))....)))))).............. (-15.60 = -16.13 + 0.53)
Location | 1,733,643 – 1,733,739 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 68.16 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -11.48 |
Energy contribution | -11.56 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.33 |
Mean z-score | -2.46 |
Structure conservation index | 0.41 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1733643 96 + 27905053 ACACUGA-GCACAAGGAGCACAAGGAGCUCAAGGAGCGCAAGGAGGCAGUGGCAUCAGCGCCUAAAAGUAUGCAAUGCUAACGCGCCUUGCUCCAAA .......-......(((((.......((((...)))).....(((((...(((......)))..............((....))))))))))))... ( -29.30) >DroGri_CAF1 44011 81 + 1 --ACAGACACACAUACA---------ACACAGUAACAGCGGUGGGGCAG-----GCAGCGGCUAAAAGUAUGCAAUGCUUACGAGCUGCGUUGCAAA --...............---------.....(((((.(((((.(((((.-----(((...((.....)).)))..)))))....))))))))))... ( -21.80) >DroSec_CAF1 42805 85 + 1 ----------ACAAGGAGCACAAGGAGCUCAAGGAG--CAAGGAGGCAGCGGCAUCAGCGCCUAAAAGUAUGCAAUGCUAACGCGCCUUGCUCCAAA ----------.....((((.......))))..((((--(((((((((.((.......)))))).............((....)).)))))))))... ( -34.00) >DroEre_CAF1 41825 78 + 1 -------------------CCAAGCGGCGCAAGCGGCGCAAGGAGGCAGCGGUAUCAGCGCCUAAGAGUAUGCAAUGCUAACGCGCCUUGCUCCAAA -------------------....((.((....)).))((((((((((.((.......)))))).............((....)).))))))...... ( -30.30) >DroYak_CAF1 42793 77 + 1 -------------------ACAAGA-GCUCAGGCAGCGCGAGAAGGCAGCGGCAUCAGCGCCUAAAAGUAUGCAAUGCUAACGCGCCUUGCUCCAAA -------------------....((-((..((((.((((....((((.((.......))))))....))..))...((....)))))).)))).... ( -25.20) >consensus __________ACA___A__ACAAGG_GCUCAAGCAGCGCAAGGAGGCAGCGGCAUCAGCGCCUAAAAGUAUGCAAUGCUAACGCGCCUUGCUCCAAA ...................................(.((((((((((.((.......))))))...(((((...)))))......)))))).).... (-11.48 = -11.56 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:38 2006