Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,070,617 – 12,070,776 |
Length | 159 |
Max. P | 0.859896 |
Location | 12,070,617 – 12,070,736 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.51 |
Mean single sequence MFE | -32.64 |
Consensus MFE | -26.62 |
Energy contribution | -27.02 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.82 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12070617 119 + 27905053 ACAAACUUUUUGGCGUCGCCGUCGUCGUCAGCGUCAGCGUCAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU-UCUUAGUUCUUUCGACAGUAA ....(((..((((((.((....)).)))))).(((.(((...((((((((((..((((..(......)..))))..))))))))))..)))(((((..-..)))))......)))))).. ( -33.30) >DroSec_CAF1 7157 113 + 1 ACAAACUUUUUGGCGUCGCCGUCG------GCGUCAGCGUCAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU-UCUUAGUUCUUUCGACAGUAA ...((((...((((((((....))------))))))(((...((((((((((..((((..(......)..))))..))))))))))..))).......-....))))............. ( -33.70) >DroSim_CAF1 7593 113 + 1 ACAAACUUUUUGGCGUCGCCGUCG------GCGUCAGCGUCAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU-UCUUAGUUCUUUCUACAGUAA ...((((...((((((((....))------))))))(((...((((((((((..((((..(......)..))))..))))))))))..))).......-....))))............. ( -33.70) >DroEre_CAF1 9183 114 + 1 ACAAACUUUUUGGCGUCGCUGUCC------GCGUCAGCGUCAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCACCUCGCAUUAAUUUUCUUAGUUCUUUCGACAGUAA .................((((((.------......(((....(((((((((..((((..(......)..))))..)))))))))...)))(((((.....)))))......)))))).. ( -29.20) >DroYak_CAF1 9275 113 + 1 ACAAACUUUUUGGCGUCGCCGUCG------GCGUCAGCGUCAUUGCUCUGUUUACGUUUUCUCUUUCCUUGACGGCAGCGGAGCAGUUCGCAUUAAUU-UCUUAGUUCUUUCGACAGUAA ...((((...((((((((....))------))))))(((..(((((((((((..((((............))))..))))))))))).))).......-....))))............. ( -33.30) >consensus ACAAACUUUUUGGCGUCGCCGUCG______GCGUCAGCGUCAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU_UCUUAGUUCUUUCGACAGUAA ...((((...((((((..............))))))(((...((((((((((..((((..(......)..))))..))))))))))..)))............))))............. (-26.62 = -27.02 + 0.40)
Location | 12,070,657 – 12,070,776 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.35 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -22.30 |
Energy contribution | -23.70 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.78 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12070657 119 + 27905053 CAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU-UCUUAGUUCUUUCGACAGUAAGAAAAAGUUGUACUAUGCGUUUAGUUCAUGUUGAAUUUGC ..((((((((((..((((..(......)..))))..))))))))))..(((((..((.-.(((..(((((.(....).))))).)))..))...)))))...(((((.....)))))... ( -28.80) >DroSec_CAF1 7191 119 + 1 CAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU-UCUUAGUUCUUUCGACAGUAAGAAAAAGUUUUACAAUGCGUUUAGUUCAUGCUAAAUUUGC ..((((((((((..((((..(......)..))))..))))))))))..((((((..((-(((((.(((....)).).)))))))..(.....)))))))((((((....))))))..... ( -30.70) >DroSim_CAF1 7627 119 + 1 CAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU-UCUUAGUUCUUUCUACAGUAAGAAAAAGUUUUACAAUGCGUUUAGUUCAUGCUAAAUUUGC ..((((((((((..((((..(......)..))))..))))))))))..((((((....-...(((......)))..((((((.....))))))))))))((((((....))))))..... ( -30.30) >DroEre_CAF1 9217 95 + 1 CAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCACCUCGCAUUAAUUUUCUUAGUUCUUUCGACAGUAAGAAAAAGUUGUUCAC------------------------- ...(((((((((..((((..(......)..))))..)))))))))....(((....((((((((.(((....)).).))))))))...)))....------------------------- ( -23.50) >DroYak_CAF1 9309 119 + 1 CAUUGCUCUGUUUACGUUUUCUCUUUCCUUGACGGCAGCGGAGCAGUUCGCAUUAAUU-UCUUAGUUCUUUCGACAGUAAGAAAAAGUUGUACAAUGCGUUGAGUUCAUGCUGAAUUUUC .(((((((((((..((((............))))..))))))))))).((((((.((.-.(((..(((((.(....).))))).)))..))..))))))..((((((.....)))))).. ( -29.70) >consensus CAUUGCUCUGUUUACGUUUUCUCUUUCGUUGACGGCAGCGGAGCAGCUCGCAUUAAUU_UCUUAGUUCUUUCGACAGUAAGAAAAAGUUGUACAAUGCGUUUAGUUCAUGCUAAAUUUGC ...(((((((((..((((..(......)..))))..)))))))))...((((((......(((..(((((.(....).))))).)))......))))))..................... (-22.30 = -23.70 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:57 2006