Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,070,353 – 12,070,497 |
Length | 144 |
Max. P | 0.994492 |
Location | 12,070,353 – 12,070,457 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.10 |
Mean single sequence MFE | -36.92 |
Consensus MFE | -27.66 |
Energy contribution | -27.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.72 |
Structure conservation index | 0.75 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12070353 104 + 27905053 UCGCACAAUAUGCUAAAUAGCCGCUGCUUGCGUCAACGUCUCCGUUGGCG------UCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC--------AGCAACA--A ..((.......((((...((((((.((..(((((((((....))))))))------)....)).).))))))))).(.((((.((((.....)))))))).)--------.))....--. ( -34.30) >DroSec_CAF1 6893 104 + 1 UCGCACAAUAUGCUAAAUAGCCGCUGCUUGCGUCAACGUCUACGUUGGCG------UCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC--------AGCAACA--A ..((.......((((...((((((.((..(((((((((....))))))))------)....)).).))))))))).(.((((.((((.....)))))))).)--------.))....--. ( -35.20) >DroSim_CAF1 7329 104 + 1 UCGCACAAUAUGCUAAAUAGCCGCUGCUUGCGUCAAUGUCUACGUUGGCG------UCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC--------AGCAACA--A ..((.......((((...((((((.((..(((((((((....))))))))------)....)).).))))))))).(.((((.((((.....)))))))).)--------.))....--. ( -33.40) >DroEre_CAF1 8903 120 + 1 UCGCACAAUAUGCUAAAUAGCCGCUGCUUGCGUCAACGUCUCAGUCGGCGUCGUCGUCGCUGUUGCCGGCUUAGCCGCUGCGUUUGUCUAAUGCAACGCAACAAUUGGACAGCAGCAGCA ..((.......((((...((((((.....))......((..(((.(((((....))))))))..)).)))))))).(((((...((((((((...........))))))))))))).)). ( -41.30) >DroYak_CAF1 9007 111 + 1 UCGCACAAUAUGCUAAAUAGCCGCUGCUUGCGUCAACAGCUCCGUCGGCG------UCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAACAAUUGGACAGCA---GCA ..(((.....))).........(((((..(((.((.(.(((..(((((((------.......)))))))..))).).))))).((((((((...........)))))))))))---)). ( -40.40) >consensus UCGCACAAUAUGCUAAAUAGCCGCUGCUUGCGUCAACGUCUCCGUUGGCG______UCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC________AGCAACA__A ..........((((....(((.((((....(((((((......)))))))........((((....)))).)))).)))(((.((((.....)))))))...........))))...... (-27.66 = -27.90 + 0.24)
Location | 12,070,353 – 12,070,457 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.10 |
Mean single sequence MFE | -43.16 |
Consensus MFE | -34.20 |
Energy contribution | -34.48 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.42 |
Structure conservation index | 0.79 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12070353 104 - 27905053 U--UGUUGCU--------GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGA------CGCCAACGGAGACGUUGACGCAAGCAGCGGCUAUUUAGCAUAUUGUGCGA .--.((((((--------((((((((((...........)))))(((...))).))))))))))------)..(((((....))))).((((.......(((....)))......)))). ( -45.02) >DroSec_CAF1 6893 104 - 1 U--UGUUGCU--------GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGA------CGCCAACGUAGACGUUGACGCAAGCAGCGGCUAUUUAGCAUAUUGUGCGA .--.((((((--------((((((((((...........)))))(((...))).))))))))))------)(((((..(...(((((.(....))))))(((....))))..))).)).. ( -42.50) >DroSim_CAF1 7329 104 - 1 U--UGUUGCU--------GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGA------CGCCAACGUAGACAUUGACGCAAGCAGCGGCUAUUUAGCAUAUUGUGCGA .--.((((((--------((((((((((...........)))))(((...))).))))))))))------)(((((..(.........(((.....)))(((....))))..))).)).. ( -37.40) >DroEre_CAF1 8903 120 - 1 UGCUGCUGCUGUCCAAUUGUUGCGUUGCAUUAGACAAACGCAGCGGCUAAGCCGGCAACAGCGACGACGACGCCGACUGAGACGUUGACGCAAGCAGCGGCUAUUUAGCAUAUUGUGCGA .(((((((((.......(((((((((((...........)))))(((...))).))))))(((.(((((.(.........).))))).))).)))))))))......((((...)))).. ( -45.70) >DroYak_CAF1 9007 111 - 1 UGC---UGCUGUCCAAUUGUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGA------CGCCGACGGAGCUGUUGACGCAAGCAGCGGCUAUUUAGCAUAUUGUGCGA .((---((((((....(((((...........)))))(((((((((((..(.(((((.......------))))).)..)))))))).)))..))))))))......((((...)))).. ( -45.20) >consensus U__UGUUGCU________GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGA______CGCCAACGGAGACGUUGACGCAAGCAGCGGCUAUUUAGCAUAUUGUGCGA ...(((((((........((((((((..........))))))))(((...))))))))))..........((((((......(((((.(....))))))(((....)))...))).))). (-34.20 = -34.48 + 0.28)
Location | 12,070,393 – 12,070,497 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -43.20 |
Consensus MFE | -38.20 |
Energy contribution | -38.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.88 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12070393 104 + 27905053 UCCGUUGGCGUCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC--------AGCAACA--AGCGUCGGCAGCAGCAAAGCAGCAGACAGCUGACUUUUGGG .(((.....(((((((((((..((((.((.(((((((((((....(((........--------.))))))--)))....))))).)).)))).)).)))))).)))...))). ( -41.00) >DroSec_CAF1 6933 104 + 1 UACGUUGGCGUCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC--------AGCAACA--AGCGUCGGCAGCAGCAAAGCAGCAGACAGCUGACUUUUGGG ...((..((((((((((.((..(((..((((..((((((((....(((........--------.))))))--)))))))))))).))...))))).))).))..))....... ( -40.50) >DroSim_CAF1 7369 104 + 1 UACGUUGGCGUCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC--------AGCAACA--AGCGUCGGCAGCAGCAAAGCAGCAGACAGCUGACUUUUGGG ...((..((((((((((.((..(((..((((..((((((((....(((........--------.))))))--)))))))))))).))...))))).))).))..))....... ( -40.50) >DroYak_CAF1 9047 111 + 1 UCCGUCGGCGUCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAACAAUUGGACAGCA---GCAGCGUCGGCAGCAGCAAAGCAGCAGACAGCUGACUUUUGGG ...((((((((((((((((.((((...)))((((((((.(((((((...........)))))))))).---)))))).))))))).((......)).))).))))))....... ( -50.80) >consensus UACGUUGGCGUCGCUGUCGCCGGCUUAGCCGCUGCGCUUGUCUAAUGCAACGCAAC________AGCAACA__AGCGUCGGCAGCAGCAAAGCAGCAGACAGCUGACUUUUGGG .........(((((((((((..((((.((.(((((((((((.....)))).))............((.......))....))))).)).)))).)).)))))).)))....... (-38.20 = -38.20 + -0.00)
Location | 12,070,393 – 12,070,497 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -47.60 |
Consensus MFE | -43.40 |
Energy contribution | -43.40 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.17 |
Structure conservation index | 0.91 |
SVM decision value | 2.48 |
SVM RNA-class probability | 0.994492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12070393 104 - 27905053 CCCAAAAGUCAGCUGUCUGCUGCUUUGCUGCUGCCGACGCU--UGUUGCU--------GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGACGCCAACGGA ((.....(((.((((((.(((((((.((((((((....(((--((((..(--------((......)))...))))))))))))))).))).)))))))))))))......)). ( -48.50) >DroSec_CAF1 6933 104 - 1 CCCAAAAGUCAGCUGUCUGCUGCUUUGCUGCUGCCGACGCU--UGUUGCU--------GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGACGCCAACGUA .......(((.((((((.(((((((.((((((((....(((--((((..(--------((......)))...))))))))))))))).))).)))))))))))))......... ( -48.00) >DroSim_CAF1 7369 104 - 1 CCCAAAAGUCAGCUGUCUGCUGCUUUGCUGCUGCCGACGCU--UGUUGCU--------GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGACGCCAACGUA .......(((.((((((.(((((((.((((((((....(((--((((..(--------((......)))...))))))))))))))).))).)))))))))))))......... ( -48.00) >DroYak_CAF1 9047 111 - 1 CCCAAAAGUCAGCUGUCUGCUGCUUUGCUGCUGCCGACGCUGC---UGCUGUCCAAUUGUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGACGCCGACGGA ((.....(((.((((((.(((((((.((((((((.(((((.((---............)).)))))((.........)))))))))).))).)))))))))))))......)). ( -45.90) >consensus CCCAAAAGUCAGCUGUCUGCUGCUUUGCUGCUGCCGACGCU__UGUUGCU________GUUGCGUUGCAUUAGACAAGCGCAGCGGCUAAGCCGGCGACAGCGACGCCAACGGA .......(((.((((((.(((((((.((((((((.(((((.....................)))))((.........)))))))))).))).)))))))))))))......... (-43.40 = -43.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:55 2006