Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,730,872 – 1,730,976 |
Length | 104 |
Max. P | 0.760194 |
Location | 1,730,872 – 1,730,976 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 81.56 |
Mean single sequence MFE | -21.17 |
Consensus MFE | -14.68 |
Energy contribution | -14.99 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.32 |
Mean z-score | -1.88 |
Structure conservation index | 0.69 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1730872 104 - 27905053 UUA--------CUGUACGUCACAGCCCAAUCCUUUCCUAAUCAAUUUAUGGAACUUCUUGGCUACUCUUUGAUGGCUAUUAAUGUUUUAUUCAGGCCUCUGAUUAAUGGCCA ...--------...........((((.......(((((((.....))).))))......)))).........((((((((((........((((....)))))))))))))) ( -20.32) >DroSec_CAF1 40072 104 - 1 UUA--------CUCUACGUCACAGCCCAAUCCUUUCCUAAUCAAUUUAUGGAACUUAUUGGCUACUCUUUGAUGGCUAUUAAUGUUUUAUUCAGCCCGCUGAUUAAUGGCCA ...--------......((((.((.(((((...(((((((.....))).))))...))))).....)).))))(((((((((........((((....))))))))))))). ( -22.80) >DroSim_CAF1 41206 104 - 1 UUA--------CUCUACGUCACAGCCCAAUCCUUUUCUAAUCAAUUUAUGGAACUUAUUGGCUACUCUUUGAUGGCUAUUAAUGUUUUAUUCAGCCCGCUGAUUAAUGGCCA ...--------......((((.((.(((((...(((((((.....))).))))...))))).....)).))))(((((((((........((((....))))))))))))). ( -19.90) >DroEre_CAF1 39304 104 - 1 UUA--------CUGUACGUCACAGCCCAAUCCUUUCCUAAUCAAUUUAUGGAACUUAUUGGCUACUCCUCGAUGGCUAUUAAUGUUUUAUUCAGCCCGCUGAUUAAUGGCCA ...--------((((.....)))).(((((...(((((((.....))).))))...)))))...........((((((((((........((((....)))))))))))))) ( -22.90) >DroYak_CAF1 39970 104 - 1 UUA--------AUCUACGUCACAGCCCAAUCCUUUCUUAAUCAAUUUAUGGAACUUAUUGGCUACUCUUUGAUGGCUAUUAAUGUUUUAUUCAGCCCGCUGAUUAAUGGCCA ...--------......((((.((.(((((..((((.(((.....))).))))...))))).....)).))))(((((((((........((((....))))))))))))). ( -20.20) >DroAna_CAF1 35826 101 - 1 UUCAAGUCCCGAAGUUCGUCACACUUC------CUGCUGGCCUAUUUAAG-----CAUUCACAACACUUUGAUUGCCAUUAAUGUAUUAUUCAUUCAGGGGACUGAUGGAUA (((((((((((((((.......)))))------...(((..........(-----((.(((........))).)))....((((.......)))))))))))))..)))).. ( -20.90) >consensus UUA________CUCUACGUCACAGCCCAAUCCUUUCCUAAUCAAUUUAUGGAACUUAUUGGCUACUCUUUGAUGGCUAUUAAUGUUUUAUUCAGCCCGCUGAUUAAUGGCCA ......................((((.......(((((((.....))).))))......)))).........((((((((((........((((....)))))))))))))) (-14.68 = -14.99 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:37 2006