Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,060,419 – 12,060,526 |
Length | 107 |
Max. P | 0.548766 |
Location | 12,060,419 – 12,060,526 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -17.55 |
Energy contribution | -16.90 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.32 |
Mean z-score | -1.45 |
Structure conservation index | 0.77 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12060419 107 + 27905053 CAUAUCCACACUAAAAUCCACCGAAACCUGCAGCACCGUUUUACCCUAACCCGUGGAACGGGGUUCUUAUUUUCCUAAAUAUUUAGGAAUAUA-------------GAUUUAAUUUCUAA .............(((((.............(((.(((((((((........))))))))).)))..(((.(((((((....))))))).)))-------------)))))......... ( -20.90) >DroSim_CAF1 41699 107 + 1 CAUAUCCACACUAAAAUCCGCCGAAACCUGCAGCACUGUUUUACCCUAACCCGUGGAACGGGGUUCUUAUUUUGCUAAAUAUUUUGCAAAGUA-------------GCUUUAAUUUCUAA ......................((((..((.(((.(((((((((........)))))))))......((((((((..........))))))))-------------))).)).))))... ( -19.90) >DroYak_CAF1 32051 120 + 1 CAUAUCCACACUAAAAUCCGCCGAAACCUGCAGCACUCUUUUGCUCUAACCCGUGGGACGGGGUUCAUAUUUUGUCGAAUAUUUGGCAAGCUAGUGCUGGAUCCUUGCUUUAAUUUCCAU ...((((((((((.........(((.((((.((((......))))....((....)).)))).)))....((((((((....)))))))).))))).))))).................. ( -27.60) >consensus CAUAUCCACACUAAAAUCCGCCGAAACCUGCAGCACUGUUUUACCCUAACCCGUGGAACGGGGUUCUUAUUUUGCUAAAUAUUUAGCAAAAUA_____________GCUUUAAUUUCUAA ......................((((...(.(((.(((((((((........))))))))).)))).(((((((((((....)))))))))))....................))))... (-17.55 = -16.90 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:13 2006