| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,059,802 – 12,059,917 |
| Length | 115 |
| Max. P | 0.689276 |
| Location | 12,059,802 – 12,059,917 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.80 |
| Mean single sequence MFE | -39.20 |
| Consensus MFE | -36.03 |
| Energy contribution | -35.70 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.689276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12059802 115 - 27905053 GGGGCUGAACACCAUUGAUAACUGAGAUCAGGUGCACAGCCAGGAAUGGAGAUGGCCUGAAAUUGCUAAUCUUGGGGUUUCCUAUUGGCUGAUUGGCGCCGCAUUCGUUCCUUU-----A ..(((((..((((..((((.......))))))))..)))))(((((((((..(((((..(....((((((...(((....)))))))))...)..).))))..)))))))))..-----. ( -42.60) >DroSim_CAF1 41087 115 - 1 GGGGCUGAACACCAUUGAUAACUGAGAUCAGGUGCACAGCCAGGAAUCGAGAUGGCCUGAAAUUGCUAAUCUUGGGGUUUCCUAUUGGCUGAUUGGCGCCGCAUUCGUUCCUUU-----A ..(((((..((((..((((.......))))))))..)))))(((((.((((.(((((..(....((((((...(((....)))))))))...)..).))))..)))))))))..-----. ( -38.50) >DroYak_CAF1 31412 120 - 1 GGGGCUGAACACCAUUGAUAACUGAGAUCAGGUGCACAGCCAGUAAUCGAGAUGGCCUAAAAUUGCUAAUCUUGGGGUUUCCCAUUGGCUGAUUGGCGCUGCAUUCGUUUCUUUAACGUA ((.((..(.((((..((((.......))))))))..((((((((...(((((((((........))).))))))(((...))))))))))).)..)).)).....((((.....)))).. ( -36.50) >consensus GGGGCUGAACACCAUUGAUAACUGAGAUCAGGUGCACAGCCAGGAAUCGAGAUGGCCUGAAAUUGCUAAUCUUGGGGUUUCCUAUUGGCUGAUUGGCGCCGCAUUCGUUCCUUU_____A ..(((((..((((..((((.......))))))))..)))))((((((.((..((((((((....(((((...((((....)))))))))...)))).))))..)).))))))........ (-36.03 = -35.70 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:12 2006