Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,058,536 – 12,058,696 |
Length | 160 |
Max. P | 0.987542 |
Location | 12,058,536 – 12,058,656 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -44.03 |
Consensus MFE | -42.34 |
Energy contribution | -42.23 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.78 |
Structure conservation index | 0.96 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12058536 120 - 27905053 UUUUGCUCCAGCAGCGCUGCCGGCGUCAGCGUCGCAGCUGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUAGUUUAAUUUGCCGCUGCCAGGGAUUGUGGAUGCUCCAAAC ....(((((((((((((((((((((....))))).....))))))))))....(((..((.((.....(((.(((....))).)))...)).)).)))........)))).))....... ( -42.10) >DroSim_CAF1 39906 120 - 1 UUUUGCUCCAGCAGCGCUGCCGGCGUCAGCGUCGCAGUUGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUAGUUUAAUUUGCCGCUGCCAGGGAUUGUGGAUGCUGCAAGC .(((((..(.(((((((((((((((....))))).....)))))))))).....((((((.((((((.....((..((((...))))..)).......)))))).)))))))..))))). ( -44.70) >DroYak_CAF1 30123 120 - 1 UUUUGCUCCAGCAGCGCUGCCGGCGUCGACGUUGCAGUGGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUAGUUUAAUUUGCCGCUGCCAGGGAUUGUGGAUGCUGCAAAC .(((((..(.(((((((((((.(((.......)))...))))))))))).....((((((.((((((.....((..((((...))))..)).......)))))).)))))))..))))). ( -45.30) >consensus UUUUGCUCCAGCAGCGCUGCCGGCGUCAGCGUCGCAGUUGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUAGUUUAAUUUGCCGCUGCCAGGGAUUGUGGAUGCUGCAAAC .(((((....(((((((((((((((....))))).....)))))))))).....((((((.((((((.....((..((((...))))..)).......)))))).))))))...))))). (-42.34 = -42.23 + -0.11)
Location | 12,058,576 – 12,058,696 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -47.12 |
Consensus MFE | -46.47 |
Energy contribution | -46.25 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.83 |
Structure conservation index | 0.99 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12058576 120 - 27905053 UUGCCGAUUGGGGUUAUAAUGGAUUUCGACAGUCCAAGAGUUUUGCUCCAGCAGCGCUGCCGGCGUCAGCGUCGCAGCUGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUA ..((((((((((((.....((((((.....))))))........))))).(((((((((((((((....))))).....)))))))))))))))))..((.((.......))))...... ( -47.02) >DroSim_CAF1 39946 120 - 1 UUGCCGAUUGGGGUUAUAAUGGAUUUCGACAGUCCAAGAGUUUUGCUCCAGCAGCGCUGCCGGCGUCAGCGUCGCAGUUGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUA ..((((((((((((.....((((((.....))))))........))))).(((((((((((((((....))))).....)))))))))))))))))..((.((.......))))...... ( -47.02) >DroYak_CAF1 30163 120 - 1 UUGCCGAUUGGGGUUAUAAUGGAUUUCGACAGUCCAAGAGUUUUGCUCCAGCAGCGCUGCCGGCGUCGACGUUGCAGUGGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUA ..((((((((((((.....((((((.....))))))........))))).(((((((((((.(((.......)))...))))))))))))))))))..((.((.......))))...... ( -47.32) >consensus UUGCCGAUUGGGGUUAUAAUGGAUUUCGACAGUCCAAGAGUUUUGCUCCAGCAGCGCUGCCGGCGUCAGCGUCGCAGUUGCAGCGCUGCAAUCGGUUCGCUGUUCCUUUUACGCUUAUUA ..((((((((((((.....((((((.....))))))........))))).(((((((((((((((....))))).....)))))))))))))))))..((.((.......))))...... (-46.47 = -46.25 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:11 2006