Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,057,375 – 12,057,469 |
Length | 94 |
Max. P | 0.924216 |
Location | 12,057,375 – 12,057,469 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.84 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -16.79 |
Energy contribution | -17.23 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.06 |
Mean z-score | -1.51 |
Structure conservation index | 0.66 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12057375 94 - 27905053 G---CUGCUGUCUCCUCCUCUCUCU-----------------------UCGCUCGCCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACGGCAAGCAACAACAGCCAC (---(((((((((............-----------------------((((......)))).........((((....))))..............))))))).)))............ ( -21.90) >DroSim_CAF1 38731 114 - 1 G---CUGCUGUCUCUCCCUCUCCUUCGAGCCAACUAUUGGCAUCUCUGUCGCUCGCCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACGGCAAGCAC---AAGUCAC (---(((((((((............(((((((.....))))......(((((......))))).....)))((((....))))..............))))))).)))..---....... ( -30.30) >DroYak_CAF1 28701 104 - 1 GGCGUCGCUGGCUCUGCCGC--------------UAUUGGCAUCCCUGUCGCUCACCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACAGCAAGCAACAACAGCC-- (((((((.((((......))--------------)).))))....(((((.........(((......)))((((....))))...............)))))............)))-- ( -24.00) >consensus G___CUGCUGUCUCUCCCUCUC__U_________UAUUGGCAUC_CUGUCGCUCGCCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACGGCAAGCAACAACAGCCAC ......(((((((..................................(((((......)))))........((((....))))..............)))))))................ (-16.79 = -17.23 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:09 2006