Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,051,730 – 12,051,850 |
Length | 120 |
Max. P | 0.811512 |
Location | 12,051,730 – 12,051,850 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -45.27 |
Consensus MFE | -45.25 |
Energy contribution | -45.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.02 |
Mean z-score | -1.74 |
Structure conservation index | 1.00 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12051730 120 - 27905053 GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAAUGCUU (((((...)))))(((.((...(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..).)).))).. ( -43.80) >DroSim_CAF1 23099 120 - 1 GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAACGCUU ((((((((((.....)))))))(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..)....))).. ( -46.00) >DroYak_CAF1 22872 120 - 1 GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAACGCUU ((((((((((.....)))))))(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..)....))).. ( -46.00) >consensus GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAACGCUU ((((((((((.....)))))))(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..)....))).. (-45.25 = -45.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:06 2006