| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,729,481 – 1,729,583 |
| Length | 102 |
| Max. P | 0.536062 |
| Location | 1,729,481 – 1,729,583 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.23 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -25.02 |
| Energy contribution | -25.33 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.536062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1729481 102 + 27905053 GUACACCCGGUCGUCCUUCGCCUCCGGCUCGAUGUCGCACGGCAAGGAUGCGGUUCGUCCCAGAACGGCCUCCACGGCCACCGUGGAAACUAAAAG--------GGAAGG-- .....(((((((((((((.(((..((((.....))))...)))))))))...((((......))))))))(((((((...)))))))........)--------))....-- ( -42.20) >DroVir_CAF1 44170 104 + 1 AUAGACACGGUCGUCCUUUGCCUCCGGCUCAAUGUCACACGGCAAGGAUGCGGUGCGUCCCAGCACGGCCUCCACAGCCACAGUGCUAACUGCAAA--------GAGAGAAA ...(((...))).((((((((....((((...((((....)))).(((.((.((((......)))).)).)))..))))..(((....))))))))--------).)).... ( -33.90) >DroPse_CAF1 33023 109 + 1 AUACACACGAUCGUCCUUCGCCUCCGGCUCUAUGUCGCACGGCAGGGAUGCGGUGCGUCCCAGUACUGCCUCCACGGCCACUGUGGAGACUGCAAGAAAAAGGAAAGAG--- ............((((((.(((..((((.....))))...)))))))))(((((((......)))))))((((((((...)))))))).....................--- ( -37.30) >DroGri_CAF1 38810 104 + 1 GUAGACACGAUCGUCCUUUGCUUCCGGCUCAAUGUCGCAGGGCAAGGAUGCGGUGCGUCCCAGCACGGCCUCCACAGCCACAGUAGAAACUGCAAA--------AAGAGCAA ...(((......)))..((((((..((((...((((....)))).(((.((.((((......)))).)).)))..)))).((((....))))....--------..)))))) ( -33.30) >DroWil_CAF1 34236 102 + 1 AUAUACACGAUCAUCUUUGGCCUCCGGCUCAAUGUCACAGGGCAAGGAUGCAGUGCGUCCCAGUACGGCUUCCACGGCCACUGUAGAAACUGCAAU--------GAGAAA-- ..........(((((((((.(((..(((.....)))..))).))))))((((((...(..((((..((((.....))))))))..)..)))))).)--------))....-- ( -31.90) >DroAna_CAF1 34679 102 + 1 GUACACCCGAUCGUCCUUCGCCUCCGGCUCGAUGUCGCACGGUAAGGAUGCGGUACGUCCCAGAACAGCUUCUACGGCCACUGUGGAAACUGAAAA--------AAAAUU-- (((...(((..(((((((.(((..((((.....))))...)))))))))))))))).........(((.((((((((...)))))))).)))....--------......-- ( -30.50) >consensus AUACACACGAUCGUCCUUCGCCUCCGGCUCAAUGUCGCACGGCAAGGAUGCGGUGCGUCCCAGAACGGCCUCCACGGCCACUGUGGAAACUGCAAA________AAGAGA__ ............((((((.(((..((((.....))))...)))))))))((.((((......)))).)).(((((((...)))))))......................... (-25.02 = -25.33 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:36 2006