Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,050,348 – 12,050,461 |
Length | 113 |
Max. P | 0.971804 |
Location | 12,050,348 – 12,050,461 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -41.61 |
Consensus MFE | -32.83 |
Energy contribution | -33.50 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.10 |
Mean z-score | -3.89 |
Structure conservation index | 0.79 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12050348 113 + 27905053 GGCUCUUCGUUCGGCCUGGCUCUCAUAAAUGACAUAGAGAGAGAGAGAGAGGAAAAGAGGGAGGUGG------AUGACGGUUGGUAACUGUGGGAGAGCGUGGGCCAAACAAAGAGCCA (((((((.(((.((((((((((((........(((............................))).------.(.(((((.....))))).))))))).)))))).))).))))))). ( -38.29) >DroSim_CAF1 21709 111 + 1 GGCUCUUCGUUCGGCCUGGCUCUCAUAAAUGAA--CGAGAGAGAGAGAGAGGAAAAGAGGGAGGUGG------AUGACGGUUGGUAACUGUGGGAGAGCCUGGGCCAAACAAAGAGCCA (((((((.(((.((((((((((((.........--(....)..........................------.(.(((((.....))))).)))))))).))))).))).))))))). ( -43.10) >DroYak_CAF1 21440 117 + 1 GGCUCUCCGUUCGGCUCGGCUCUCAUGAAAGAG--AGAGAGAGAGCGAGUGGAAGGGAGGGAGGUGGAGGUCGAUGUUGGUUGGUAACUGUGGGAGAACCUGGGCCAAACAAAGAGCCA ((((((((.(((.(((((.(((((.........--.....)))))))))).))).)))....(((..(((((.....((((.....)))).....).))))..))).......))))). ( -43.44) >consensus GGCUCUUCGUUCGGCCUGGCUCUCAUAAAUGAA__AGAGAGAGAGAGAGAGGAAAAGAGGGAGGUGG______AUGACGGUUGGUAACUGUGGGAGAGCCUGGGCCAAACAAAGAGCCA (((((((.(((.((((((((((((.......................................((........)).(((((.....)))))..))))))).))))).))).))))))). (-32.83 = -33.50 + 0.67)
Location | 12,050,348 – 12,050,461 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -33.16 |
Energy contribution | -33.05 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -5.73 |
Structure conservation index | 0.90 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12050348 113 - 27905053 UGGCUCUUUGUUUGGCCCACGCUCUCCCACAGUUACCAACCGUCAU------CCACCUCCCUCUUUUCCUCUCUCUCUCUCUCUAUGUCAUUUAUGAGAGCCAGGCCGAACGAAGAGCC .((((((((((((((((...((((((..((.((.....)).))...------................................(((.....)))))))))..)))))))))))))))) ( -35.60) >DroSim_CAF1 21709 111 - 1 UGGCUCUUUGUUUGGCCCAGGCUCUCCCACAGUUACCAACCGUCAU------CCACCUCCCUCUUUUCCUCUCUCUCUCUCUCG--UUCAUUUAUGAGAGCCAGGCCGAACGAAGAGCC .((((((((((((((((..(((((((....................------................................--.........))))))).)))))))))))))))) ( -38.65) >DroYak_CAF1 21440 117 - 1 UGGCUCUUUGUUUGGCCCAGGUUCUCCCACAGUUACCAACCAACAUCGACCUCCACCUCCCUCCCUUCCACUCGCUCUCUCUCU--CUCUUUCAUGAGAGCCGAGCCGAACGGAGAGCC .(((((((((((((((.(.(((.((.....))..)))....................................((((((.....--.........)))))).).))))))))))))))) ( -36.74) >consensus UGGCUCUUUGUUUGGCCCAGGCUCUCCCACAGUUACCAACCGUCAU______CCACCUCCCUCUUUUCCUCUCUCUCUCUCUCU__CUCAUUUAUGAGAGCCAGGCCGAACGAAGAGCC .(((((((((((((((...(((((((.....................................................................)))))))..))))))))))))))) (-33.16 = -33.05 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:03 2006