| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,049,024 – 12,049,278 |
| Length | 254 |
| Max. P | 0.997286 |
| Location | 12,049,024 – 12,049,130 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 86.84 |
| Mean single sequence MFE | -43.77 |
| Consensus MFE | -35.41 |
| Energy contribution | -35.20 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12049024 106 - 27905053 AAGACGGAGUCUGUGGUCUGUCUCAGUCGAAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCA------------GGAGCAGAAACAGGGGAAGGGGCGCUUCAUCAGUC ..((((...(((((..((((((((.(((...(((((((.((.((....)).)).)))))))))).))))))------------)).)))))..).(..((((.....))))..).))) ( -42.20) >DroSim_CAF1 20359 105 - 1 AAGACGGAGUCUGUGGUCUGUCUCAGUCGCAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCA------------GGGGCAGAAACAGG-GAUGGGGCGCUCCAUCAGUC ..(((....(((((..((((((((.(((...(((((((.((.((....)).)).)))))))......))).------------)))))))).)))))-((((((....)))))).))) ( -44.90) >DroYak_CAF1 20036 118 - 1 AAGACGGAGUCUGUGGUCUGUCUCAGUCGCAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCACGGGCAGGGGCAGAGGCAGAAACAGGGGGCGGGACACUCUAUCAGUC ..((..((((((((..((((((((.(((.(.(((((((.((.((....)).)).))))))).......((....)).).))).)))))))).))))..(......)))))..)).... ( -44.20) >consensus AAGACGGAGUCUGUGGUCUGUCUCAGUCGCAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCA____________GGGGCAGAAACAGGGGAAGGGGCGCUCCAUCAGUC ..((.(((((((((..((((((((.(((...(((((((.((.((....)).)).)))))))......)))....((....)).)))))))).))))..(......)))))).)).... (-35.41 = -35.20 + -0.21)
| Location | 12,049,059 – 12,049,163 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 88.29 |
| Mean single sequence MFE | -47.05 |
| Consensus MFE | -42.60 |
| Energy contribution | -41.98 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.91 |
| SVM decision value | 2.83 |
| SVM RNA-class probability | 0.997286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12049059 104 - 27905053 CA-------GUUGCGGCUCUGCUUUGUCUACGAAAGGUCGAAGACGGAGUCUGUGGUCUGUCUCAGUCGAAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCA------- .(-------((..(((((((((((((....(....)..))))).))))).)))..).))(((((.(((...(((((((.((.((....)).)).)))))))))).))))).------- ( -44.00) >DroSim_CAF1 20393 104 - 1 CA-------GUUGCGGCUCUGCUUUGUCUACGAAAGGUCGAAGACGGAGUCUGUGGUCUGUCUCAGUCGCAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCA------- .(-------((..(((((((((((((....(....)..))))).))))).)))..).))(((((.(((...(((((((.((.((....)).)).)))))))))).))))).------- ( -44.00) >DroYak_CAF1 20076 111 - 1 CA-------GUUGCGGCUCUGCUUUGUCUACGAAAGGUCGAAGACGGAGUCUGUGGUCUGUCUCAGUCGCAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCACGGGCAG ..-------.....((((((((((((....(....)..))))).)))))))..((.((((((((.(((...(((((((.((.((....)).)).)))))))))).)))))).)).)). ( -45.00) >DroAna_CAF1 19223 110 - 1 CAGUUGCCAGUUGCGGCUCUGCUUUGUCUACGAAAGGUCGAAGACGGAGUCUGUGGUCUGUCCCAGUCGCUGCU-CGGUCCAAGGGGACUUGGCCUGAAGUGGCUGGGGGA------- .......((((..(((((((((((((....(....)..))))).))))).)))..).)))(((((((((((..(-(((.(((((....))))).)))))))))))))))..------- ( -55.20) >consensus CA_______GUUGCGGCUCUGCUUUGUCUACGAAAGGUCGAAGACGGAGUCUGUGGUCUGUCUCAGUCGCAGCUUCAGUCUAAGGGGACUCAGCCUGAAGUGACAGAGGCA_______ ..........(..(((((((((((((....(....)..))))).))))).)))..)..((((((.(((...(((((((.((.((....)).)).)))))))))).))))))....... (-42.60 = -41.98 + -0.62)
| Location | 12,049,163 – 12,049,278 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 91.74 |
| Mean single sequence MFE | -40.07 |
| Consensus MFE | -37.16 |
| Energy contribution | -37.16 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12049163 115 + 27905053 GCGGCAAUAACCACGCGACAAGAACGGCGCUCGUCGACGGUGACGCUGUCGCUGCUGAGACUCGUUAAUGUUGCUGAUACCAUGGCCAUAGCCAUAGCCAUAGCCAUAGGUUGCC ..((((.....((.((((((..(((((..(((((((((((.....))))))..)).)))..)))))..))))))))..((((((((.((.((....)).)).))))).))))))) ( -41.70) >DroSim_CAF1 20497 109 + 1 GCGGCAAUAAUCACGCGACAACAACGGCGCUCGUCGACGGUGACGCUGUCGCUGCUGAGACUCGUUAAUGUUGCUGAUACCAUGGCCAUAGCC------AUAGCCAUAGGUUGCC ..((((((.((((.((((((..(((((..(((((((((((.....))))))..)).)))..)))))..))))))))))...(((((....)))------))........)))))) ( -40.20) >DroYak_CAF1 20187 103 + 1 GCGGCAAUAACCACGCGACAACAACGGCGCUCGUCGACGGUGACGCUGUCGCUGCUGAGACUCGUUAAUGUUGCUGAUACCAUGGCCAUA------------GCCAUAGGUUGCC ..((((.....((.((((((..(((((..(((((((((((.....))))))..)).)))..)))))..))))))))..((((((((....------------))))).))))))) ( -38.30) >consensus GCGGCAAUAACCACGCGACAACAACGGCGCUCGUCGACGGUGACGCUGUCGCUGCUGAGACUCGUUAAUGUUGCUGAUACCAUGGCCAUAGCC______AUAGCCAUAGGUUGCC ..((((.....((.((((((..(((((..(((((((((((.....))))))..)).)))..)))))..))))))))..((((((((................))))).))))))) (-37.16 = -37.16 + 0.00)
| Location | 12,049,163 – 12,049,278 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 91.74 |
| Mean single sequence MFE | -42.30 |
| Consensus MFE | -37.05 |
| Energy contribution | -39.00 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.02 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12049163 115 - 27905053 GGCAACCUAUGGCUAUGGCUAUGGCUAUGGCCAUGGUAUCAGCAACAUUAACGAGUCUCAGCAGCGACAGCGUCACCGUCGACGAGCGCCGUUCUUGUCGCGUGGUUAUUGCCGC (((((.(((((((((((((....))))))))))))).((((((.(((..((((.(((((....((....))(((......)))))).))))))..))).)).))))..))))).. ( -47.90) >DroSim_CAF1 20497 109 - 1 GGCAACCUAUGGCUAU------GGCUAUGGCCAUGGUAUCAGCAACAUUAACGAGUCUCAGCAGCGACAGCGUCACCGUCGACGAGCGCCGUUGUUGUCGCGUGAUUAUUGCCGC (((((.((((((((((------....)))))))))).((((((.(((.(((((.(((((....((....))(((......)))))).))))))).))).)).))))..))))).. ( -41.10) >DroYak_CAF1 20187 103 - 1 GGCAACCUAUGGC------------UAUGGCCAUGGUAUCAGCAACAUUAACGAGUCUCAGCAGCGACAGCGUCACCGUCGACGAGCGCCGUUGUUGUCGCGUGGUUAUUGCCGC (((((.(((((((------------....))))))).((((((.(((.(((((.(((((....((....))(((......)))))).))))))).))).)).))))..))))).. ( -37.90) >consensus GGCAACCUAUGGCUAU______GGCUAUGGCCAUGGUAUCAGCAACAUUAACGAGUCUCAGCAGCGACAGCGUCACCGUCGACGAGCGCCGUUGUUGUCGCGUGGUUAUUGCCGC (((((.((((((((((.((....)).)))))))))).((((((.(((.(((((.(((((....((....))(((......)))))).))))))).))).)).))))..))))).. (-37.05 = -39.00 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:01 2006