Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,048,321 – 12,048,411 |
Length | 90 |
Max. P | 0.817328 |
Location | 12,048,321 – 12,048,411 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -23.87 |
Energy contribution | -23.87 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.94 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12048321 90 + 27905053 UGGAUAAGCCUCGAAAACAAAAUCAUCAAAGCGAGCACUCAACCCCCAGCUAGCCAGCUGAACGAAAGAAGCGGGCUGCAUGGGAUGAGA .......((.(((..................))))).((((...((((((.((((.(((...(....).))).)))))).)))).)))). ( -27.27) >DroSim_CAF1 19523 90 + 1 UGGAUAAGCCUCGAAAACAAAAUCAUCAAAGCGAGCACUCAACCCCCAGCUAGCCAGCUGAACGAAAGAAGCGGGCUGCAUGGGAUGCGA .......((((((..................)))).........((((((.((((.(((...(....).))).)))))).))))..)).. ( -24.57) >DroYak_CAF1 19215 90 + 1 UGGAUAAGCCUCGAAAACAAAAUCAUCAAAGCGAGCAGUCAACCCCCAGCUAGCCAGCUGAACGAAAGAAGCGGGCUGCAUGGGAUGCGA .......((((((..................)))).........((((((.((((.(((...(....).))).)))))).))))..)).. ( -24.57) >consensus UGGAUAAGCCUCGAAAACAAAAUCAUCAAAGCGAGCACUCAACCCCCAGCUAGCCAGCUGAACGAAAGAAGCGGGCUGCAUGGGAUGCGA .......((.(((..................)))))........((((((.((((.(((...(....).))).)))))).))))...... (-23.87 = -23.87 + -0.00)
Location | 12,048,321 – 12,048,411 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -26.43 |
Energy contribution | -26.43 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.94 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12048321 90 - 27905053 UCUCAUCCCAUGCAGCCCGCUUCUUUCGUUCAGCUGGCUAGCUGGGGGUUGAGUGCUCGCUUUGAUGAUUUUGUUUUCGAGGCUUAUCCA .((((.(((..((((((.(((..........))).)))).))...))).)))).....(((((((.(((...))).)))))))....... ( -29.10) >DroSim_CAF1 19523 90 - 1 UCGCAUCCCAUGCAGCCCGCUUCUUUCGUUCAGCUGGCUAGCUGGGGGUUGAGUGCUCGCUUUGAUGAUUUUGUUUUCGAGGCUUAUCCA ......((((.((((((.(((..........))).)))).))))))((.(((((.((((....(((......)))..))))))))).)). ( -28.10) >DroYak_CAF1 19215 90 - 1 UCGCAUCCCAUGCAGCCCGCUUCUUUCGUUCAGCUGGCUAGCUGGGGGUUGACUGCUCGCUUUGAUGAUUUUGUUUUCGAGGCUUAUCCA (((..(((((.((((((.(((..........))).)))).)))))))..)))......(((((((.(((...))).)))))))....... ( -26.80) >consensus UCGCAUCCCAUGCAGCCCGCUUCUUUCGUUCAGCUGGCUAGCUGGGGGUUGAGUGCUCGCUUUGAUGAUUUUGUUUUCGAGGCUUAUCCA ((...(((((.((((((.(((..........))).)))).)))))))...))......(((((((.(((...))).)))))))....... (-26.43 = -26.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:58 2006