Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,045,193 – 12,045,297 |
Length | 104 |
Max. P | 0.542519 |
Location | 12,045,193 – 12,045,297 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.72 |
Mean single sequence MFE | -32.75 |
Consensus MFE | -14.18 |
Energy contribution | -14.74 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.29 |
Mean z-score | -1.79 |
Structure conservation index | 0.43 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12045193 104 + 27905053 GCCACGGAGCAGCAAAAACACAUAG---CGUUGUCAU------GGCAAAAC--UCACUCGGUUUUGAUCC-CAGCUCGAAUCUUUGGUCAAAUCGAGAGACGAAAG----CCGAGUGCUU ((((..((.((((............---.)))))).)------))).....--.(((((((((((..((.-...(((((.............))))).))..))))----)))))))... ( -29.84) >DroSim_CAF1 16433 102 + 1 UCCACGGAG---CAAAAACACUGAG---CGUUGCCAU------GGCAAAAC--UCACUCGGUUUUGAUCCCCAACUCGAAUCUUUGGUCAAAUCGAGAGACGAAAG----CCGAGAGCUU ......(((---(........((((---..((((...------.))))..)--)))(((((((((..((.....(((((.............))))).))..))))----))))).)))) ( -29.82) >DroEre_CAF1 15737 104 + 1 UCCACGGAGCAGCAAAAACACAGAG---CGUUGCCAU------GGCAAAAC--UCACUCGGUUUUGAUCC-CUGCUCGAUUCUCUAGUCAAAUCGAGAGACGAAAA----CCGAGAGCUC ......((((............(((---..((((...------.))))..)--)).(((((((((..((.-...(((((((.........))))))).))..))))----))))).)))) ( -34.80) >DroYak_CAF1 15987 104 + 1 UCCACGGAGCAGCAAAAACACAGAG---CGUUGCCAU------GGCAAAAC--UCAGUCGGUUUUGAUCC-CAGCUCGAUUCUUUGGACAAAUCGAGAGACGAAAG----CCGAGAGCUU ......((((............(((---..((((...------.))))..)--))..((((((((..((.-...(((((((.........))))))).))..))))----))))..)))) ( -30.40) >DroAna_CAF1 15198 118 + 1 UCCAAGGAGCAUCGAGAACACAAGCCACGGUUGCCAUGGCCAUGGCAAAGUAGUUG-CCUGCUCUGAUCC-GAGCUCAGGACUUGGACCAAGUCGAACGGGCGAAGCGUCCAAAGAGCAU .....((((((............((((.((...)).))))...(((((.....)))-)))))))).....-..((((..((((((...))))))....(((((...)))))...)))).. ( -38.90) >consensus UCCACGGAGCAGCAAAAACACAGAG___CGUUGCCAU______GGCAAAAC__UCACUCGGUUUUGAUCC_CAGCUCGAAUCUUUGGUCAAAUCGAGAGACGAAAG____CCGAGAGCUU ......((((....................(((((........)))))........(((((..((((........)))).(((((.(......).)))))..........))))).)))) (-14.18 = -14.74 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:56 2006