Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,044,691 – 12,044,784 |
Length | 93 |
Max. P | 0.983731 |
Location | 12,044,691 – 12,044,784 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.60 |
Mean single sequence MFE | -27.89 |
Consensus MFE | -18.87 |
Energy contribution | -17.90 |
Covariance contribution | -0.97 |
Combinations/Pair | 1.41 |
Mean z-score | -2.37 |
Structure conservation index | 0.68 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12044691 93 - 27905053 UCCGCUAAUUAGUAAUACCGCCGAAGUGGUGAACUCUACUUAACGUCAUUCU---------------------------UGUUGCGGCUUUUUAGCCGCAGAAACUAAGGCAAACCUGAU ...(((..(((((..((((((....)))))).....................---------------------------..((((((((....))))))))..))))))))......... ( -25.50) >DroSec_CAF1 15919 93 - 1 UCCGCUAAUUAGCAAUGCCGCCAAAGUGGUGAACUCUACUUAACGCCAUUCU---------------------------UGUUGUGGCUUUUUAGCCGCAGAAACUAAGGCAAACCUUAU ...(((....)))..((((..((((((((((............))))))).)---------------------------))((((((((....)))))))).......))))........ ( -26.90) >DroSim_CAF1 15913 93 - 1 UCCGCUAAUUAGCAAUGCCGCCAAAGUGGUGAACUCUACUUAACGCCAUUCU---------------------------UGUUGUGGCUUUUUAGCCGCAGAAACUAAGGCAAACCUGAU ...(((....)))..((((..((((((((((............))))))).)---------------------------))((((((((....)))))))).......))))........ ( -26.90) >DroEre_CAF1 15235 93 - 1 UCAGCUAAUUAGCAAUACCGCCAAAGUGGUGAACUCUACUUAACGGCAUUCU---------------------------AAUUGUGGCUUUUUAGCCGCAAAAACUAAGACAAACCUGAU ((((..((((((.(((.(((...((((((......))))))..))).)))))---------------------------))))((((((....))))))................)))). ( -25.70) >DroYak_CAF1 15511 93 - 1 UCGGCUAAUUAGCAAUACCGCCAAUGUGGCGAACUCCACUUAACGCCAUUCU---------------------------UGUUGUGGCUUUUUAGCCGCAGAAACUAAGACAAACCUGAU .(((((((..(((..(((.((....((((((............))))))...---------------------------.)).))))))..)))))))(((..............))).. ( -24.74) >DroAna_CAF1 14575 120 - 1 AUGCCUAAUUAGGGGCAACACCAAAGUGGUAAGUCCUACUUGGCCCUAGUCCGUGUGUAGGUAGUGCUCCUGCUCCUGCUCCUGCGGUCGCUUAACCGCAGAAAGUAAGACAAACCUGAU .(((((......)))))..........(((..(((.(((((...............(((((.(((......))))))))..(((((((......))))))).))))).)))..))).... ( -37.60) >consensus UCCGCUAAUUAGCAAUACCGCCAAAGUGGUGAACUCUACUUAACGCCAUUCU___________________________UGUUGUGGCUUUUUAGCCGCAGAAACUAAGACAAACCUGAU ...(((....)))..........((((((......))))))........................................((((((((....))))))))................... (-18.87 = -17.90 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:55 2006