Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,044,077 – 12,044,181 |
Length | 104 |
Max. P | 0.715927 |
Location | 12,044,077 – 12,044,181 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -43.43 |
Consensus MFE | -29.35 |
Energy contribution | -29.22 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.31 |
Mean z-score | -1.74 |
Structure conservation index | 0.68 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12044077 104 - 27905053 GCUUUCG-----AGCAUGAAAAAUGCAAAACAAACGCCGCCGUCGACGUCGAC--CGCGACUGCGAAGCUGGCGUCGGAGGUGGCGGUGGCGCUGGGCUUUAGGCGU---CUGC .......-----.((((.....))))........(((((((..((((((((..--(((....)))....))))))))..)))))))..((((((........)))))---)... ( -44.40) >DroSec_CAF1 15294 104 - 1 GCUUUCG-----AGCAUGAAAAAUGCAAAACAAACGCCGCCGUCGACGUCGAC--CGCGACUGCGAAGCUGGCGUCGGAGGUGGCGGUGGCGCUGGGCUUUAGGCGU---CUGC .......-----.((((.....))))........(((((((..((((((((..--(((....)))....))))))))..)))))))..((((((........)))))---)... ( -44.40) >DroSim_CAF1 15294 104 - 1 GCUUUCG-----AGCAUGAAAAAUGCAAAACAAACGCCGCUGUCGACGCCGAC--CGCGACUGCGAAGCUGGCGUCGGAGGUGGCGGUGGCGCUGGGCUUUAGGCGU---CUGC .......-----.((((.....))))........(((((((..((((((((..--(((....)))....))))))))..)))))))..((((((........)))))---)... ( -44.50) >DroEre_CAF1 14609 100 - 1 GCUUUCG-----AGCAUGAAAAAUGCAAAACAAACGCCGCCGUCGACGUCGACGGCGCAGCAGCGAAGCUGGCGUCGGAGGUG------GCGCUGGGCUUUAGGCGU---CUGC (((((((-----(((((.....))))........(((((((((((....)))))))..(((......)))))))))))))))(------(((((........)))))---)... ( -45.50) >DroYak_CAF1 14877 98 - 1 GCUUUCG-----AGCAUGAAAAAUGCAAAACAAACGCCGCCGUCGACGUCGAC--CGCAGCAGCGCAGCUGGCGUCGGAGGUG------GCGCUGGGCUUUAGGCGU---CUGC (((((((-----(((((.....))))........((((((.((((....))))--.))(((......)))))))))))))))(------(((((........)))))---)... ( -39.40) >DroMoj_CAF1 13634 104 - 1 GCCUUCGCUGGCAGCAUGAAAAAUGCAAAACAAACGUCGACUGUGACUGCGAC--GGCGACGUCUGCGUGAGCGUCACCGUCA------GCGUCAGC-AUUC-GCGGUUGCUGC (((......))).((((.....)))).......((((.(((.(((((...(((--(....)))).((....))))))).))).------))))((((-(...-.....))))). ( -42.40) >consensus GCUUUCG_____AGCAUGAAAAAUGCAAAACAAACGCCGCCGUCGACGUCGAC__CGCGACUGCGAAGCUGGCGUCGGAGGUG______GCGCUGGGCUUUAGGCGU___CUGC .............((((.....)))).......((((((((.(((((((((....(((....)))....))))))))).))).......((.....))....)))))....... (-29.35 = -29.22 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:54 2006