Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,043,126 – 12,043,222 |
Length | 96 |
Max. P | 0.511953 |
Location | 12,043,126 – 12,043,222 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 94.79 |
Mean single sequence MFE | -19.70 |
Consensus MFE | -17.55 |
Energy contribution | -17.30 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.44 |
Structure conservation index | 0.89 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12043126 96 + 27905053 GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGACAAGAUCUCUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA .((((.(((((...((((((((((.....(((((((........)))))))(......).)))))))...)))..))))).))))........... ( -21.90) >DroSec_CAF1 14335 96 + 1 GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGAAAAGAUCUCUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA .((((.(((((...((((((((((.....(((((((........)))))))(......).)))))))...)))..))))).))))........... ( -21.90) >DroSim_CAF1 14337 96 + 1 GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGACAAGAUCUGUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA .((((.(((((...((((.............(((((.....)))))..(((((((.....)))))))..))))..))))).))))........... ( -18.90) >DroEre_CAF1 13660 96 + 1 ACAAGAUUGUGAUAUCAGCAGAGGAUAUUUACGGUUUAUUUAGCUGCAGAACGGACAAGAUCUCUGCAAUUGACGCAUAAAUUUAAAUUGUAAUUA ......(((((...((((((((((...(((.(((((.....))))).))).(......).)))))))...)))..)))))................ ( -16.10) >consensus GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGACAAGAUCUCUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA .((((.(((((...((((((((((.......(((((.....))))).....(......).)))))))...)))..))))).))))........... (-17.55 = -17.30 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:53 2006