| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,042,802 – 12,042,901 |
| Length | 99 |
| Max. P | 0.578416 |
| Location | 12,042,802 – 12,042,901 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.11 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -16.99 |
| Energy contribution | -16.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12042802 99 + 27905053 -------CUCCUUCCGCUGCAUCACUUUCACGUCCUUCCCGGGGAUCCUAACCCCAA--C---CACCCCCCCACACGUAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAG -------.........((((....................((((.......))))..--.---.......(((.((......((....)).....)).)))......)))) ( -17.30) >DroSim_CAF1 14037 95 + 1 -------CCCCUUCCGCUGCAUCACUUUCACGUCCUACCCGGGGAUCCUAACCCCAA--C-------CCCCCACACGCAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAG -------.........((((....................((((.......))))..--.-------...(((.((.((...((....))..)).)).)))......)))) ( -18.50) >DroYak_CAF1 13598 110 + 1 CCCCCACC-CCAUCCGCUGCAUCACUUUCACGUCCUUUCCGGGGAUCCUAACCCCCAAACUCCCUGCCUCCCGCACGUAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAG ........-.......((((....................((((........))))........((((.....((.(.....((....)).))).....))))....)))) ( -19.00) >consensus _______C_CCUUCCGCUGCAUCACUUUCACGUCCUUCCCGGGGAUCCUAACCCCAA__C___C__CCCCCCACACGUAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAG ................((((....................((((.......))))...............(((.((......((....)).....)).)))......)))) (-16.99 = -16.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:52 2006