Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,726,161 – 1,726,270 |
Length | 109 |
Max. P | 0.768367 |
Location | 1,726,161 – 1,726,270 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 90.80 |
Mean single sequence MFE | -39.97 |
Consensus MFE | -34.17 |
Energy contribution | -33.95 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.85 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1726161 109 + 27905053 GAUGCCUGGCAUCCAGCAGACAG-------CAUCCAGCAGCCGGGCGCCCAGGUGAGCUUUAAAAAUCAAUUAACCUUGAUUUUGCCACGGGCUUUAAGUCCACUGUGGGUUAAAU ...(((((((.((.....))..(-------(.....)).)))))))(((((((((..(((..((((((((......))))))))(((...)))...)))..)))).)))))..... ( -36.50) >DroSec_CAF1 35290 116 + 1 GAUGCCCGGCAUCCAGGAGGCAGUAUCCAGCAUCCAGCAGCCGGGCGCCCAGGUGAGCUUUAAAAAUCAAUUAACCUUGAUUGUGCCACGGGCUUUAAGUCCACUGUGGGUUAAAU ...(((((((.....(((.......))).((.....)).)))))))(((((.(((.((......((((((......))))))..)))))((((.....))))....)))))..... ( -42.50) >DroSim_CAF1 36411 112 + 1 GAUGCCCGGCAUCCAGCAGCCAGCAUCCAGCAUCCAGCAGCCGGGCGCCCAGGUGAGCUUUAAAAAUCAAUUAACCUUGAUUGUGCCACGGGCUUUAAGUCCACUGUGGGUU---- ...(((((((.....((.....)).....((.....)).)))))))(((((.(((.((......((((((......))))))..)))))((((.....))))....))))).---- ( -40.90) >consensus GAUGCCCGGCAUCCAGCAGACAG_AUCCAGCAUCCAGCAGCCGGGCGCCCAGGUGAGCUUUAAAAAUCAAUUAACCUUGAUUGUGCCACGGGCUUUAAGUCCACUGUGGGUUAAAU ...(((((((.............................)))))))(((((.(((.((......((((((......))))))..)))))((((.....))))....)))))..... (-34.17 = -33.95 + -0.22)
Location | 1,726,161 – 1,726,270 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 90.80 |
Mean single sequence MFE | -40.17 |
Consensus MFE | -33.16 |
Energy contribution | -33.50 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.83 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1726161 109 - 27905053 AUUUAACCCACAGUGGACUUAAAGCCCGUGGCAAAAUCAAGGUUAAUUGAUUUUUAAAGCUCACCUGGGCGCCCGGCUGCUGGAUG-------CUGUCUGCUGGAUGCCAGGCAUC ..........(((..(((....((((.(.(((((((((((......))))))))....((((....))))))))))))((.....)-------).)))..)))(((((...))))) ( -37.30) >DroSec_CAF1 35290 116 - 1 AUUUAACCCACAGUGGACUUAAAGCCCGUGGCACAAUCAAGGUUAAUUGAUUUUUAAAGCUCACCUGGGCGCCCGGCUGCUGGAUGCUGGAUACUGCCUCCUGGAUGCCGGGCAUC ......((((..(((..(((...(((...)))..((((((......))))))....)))..))).)))).((((((((.(.(((.((........)).))).).).)))))))... ( -41.60) >DroSim_CAF1 36411 112 - 1 ----AACCCACAGUGGACUUAAAGCCCGUGGCACAAUCAAGGUUAAUUGAUUUUUAAAGCUCACCUGGGCGCCCGGCUGCUGGAUGCUGGAUGCUGGCUGCUGGAUGCCGGGCAUC ----..((((..(((..(((...(((...)))..((((((......))))))....)))..))).)))).(((((((..(..(..((..(...)..))..)..)..)))))))... ( -41.60) >consensus AUUUAACCCACAGUGGACUUAAAGCCCGUGGCACAAUCAAGGUUAAUUGAUUUUUAAAGCUCACCUGGGCGCCCGGCUGCUGGAUGCUGGAU_CUGCCUGCUGGAUGCCGGGCAUC ......((((..(((..(((...(((...)))..((((((......))))))....)))..))).)))).(((((((..(..(.................)..)..)))))))... (-33.16 = -33.50 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:35 2006