Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,037,912 – 12,038,098 |
Length | 186 |
Max. P | 0.999897 |
Location | 12,037,912 – 12,038,006 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -29.76 |
Consensus MFE | -28.36 |
Energy contribution | -28.56 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.21 |
Structure conservation index | 0.95 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12037912 94 + 27905053 UAUGUGCCCCACUUAGGUUCGCCUCAAUGGGGCCUAGCCCCUUCGACUGGCUGUUGUUGUUUUCGUUGGUGUUGAACCAAUGCCAAGUCAACUG .....((((((.(.(((....))).).)))))).(((((.........)))))..(((((((.(((((((.....)))))))..))).)))).. ( -29.90) >DroSec_CAF1 9213 94 + 1 UAUGUGCCCCACUUAGGUUCGCCUCAAUGGGGCCUAGCCCCUUCGACUGGCUGUUGUUGUUUUCGUUGGUGUUGAACCAAUGCCAAGUCAACUG .....((((((.(.(((....))).).)))))).(((((.........)))))..(((((((.(((((((.....)))))))..))).)))).. ( -29.90) >DroSim_CAF1 9250 94 + 1 UAUGUGCCCCACUUAGGUUCGCCUCAAUGGGGCCUAGCCCCUUCGACUGGCUGUUGUUGUUUUCGUUGGUGUUGAACCAAUGCCAAGUCAACUG .....((((((.(.(((....))).).)))))).(((((.........)))))..(((((((.(((((((.....)))))))..))).)))).. ( -29.90) >DroEre_CAF1 8476 94 + 1 UGUGUGCCCCACUUAGGUUCGCCUCAAUGGGGCCUAGCCCCAUCGACUGACUGUUGUUGUUUUCGUUGGUGCUGAACCAAUGCCAAGUCAACUG .((..((((((.(.(((....))).).))))))...))......(((((((....))).....(((((((.....)))))))...))))..... ( -27.90) >DroYak_CAF1 8789 94 + 1 UGUGUGCCCCACUUAGGUUCGCCUCAAUGGGGCCUAGCCCCAUCGACUGGCUGUGGUUGUUUUCGUUGGUGUUGAACCAAUGCCAAGUCAACUG .....((((((.(.(((....))).).)))))).(((((.........))))).((((((((.(((((((.....)))))))..))).))))). ( -31.20) >consensus UAUGUGCCCCACUUAGGUUCGCCUCAAUGGGGCCUAGCCCCUUCGACUGGCUGUUGUUGUUUUCGUUGGUGUUGAACCAAUGCCAAGUCAACUG .....((((((.(.(((....))).).)))))).(((((.........)))))..(((((((.(((((((.....)))))))..))).)))).. (-28.36 = -28.56 + 0.20)
Location | 12,037,912 – 12,038,006 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -31.68 |
Energy contribution | -31.52 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.59 |
Structure conservation index | 0.99 |
SVM decision value | 4.44 |
SVM RNA-class probability | 0.999897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12037912 94 - 27905053 CAGUUGACUUGGCAUUGGUUCAACACCAACGAAAACAACAACAGCCAGUCGAAGGGGCUAGGCCCCAUUGAGGCGAACCUAAGUGGGGCACAUA (..((((((.(((.(((((.....))))).(....).......)))))))))..)......((((((((.(((....))).))))))))..... ( -32.30) >DroSec_CAF1 9213 94 - 1 CAGUUGACUUGGCAUUGGUUCAACACCAACGAAAACAACAACAGCCAGUCGAAGGGGCUAGGCCCCAUUGAGGCGAACCUAAGUGGGGCACAUA (..((((((.(((.(((((.....))))).(....).......)))))))))..)......((((((((.(((....))).))))))))..... ( -32.30) >DroSim_CAF1 9250 94 - 1 CAGUUGACUUGGCAUUGGUUCAACACCAACGAAAACAACAACAGCCAGUCGAAGGGGCUAGGCCCCAUUGAGGCGAACCUAAGUGGGGCACAUA (..((((((.(((.(((((.....))))).(....).......)))))))))..)......((((((((.(((....))).))))))))..... ( -32.30) >DroEre_CAF1 8476 94 - 1 CAGUUGACUUGGCAUUGGUUCAGCACCAACGAAAACAACAACAGUCAGUCGAUGGGGCUAGGCCCCAUUGAGGCGAACCUAAGUGGGGCACACA ..(((((((.(((.(((((.....))))).(....).......))))))))))........((((((((.(((....))).))))))))..... ( -30.00) >DroYak_CAF1 8789 94 - 1 CAGUUGACUUGGCAUUGGUUCAACACCAACGAAAACAACCACAGCCAGUCGAUGGGGCUAGGCCCCAUUGAGGCGAACCUAAGUGGGGCACACA ..(((((((.(((..(((((................)))))..))))))))))........((((((((.(((....))).))))))))..... ( -33.89) >consensus CAGUUGACUUGGCAUUGGUUCAACACCAACGAAAACAACAACAGCCAGUCGAAGGGGCUAGGCCCCAUUGAGGCGAACCUAAGUGGGGCACAUA (..((((((.(((.(((((.....))))).(....).......)))))))))..)......((((((((.(((....))).))))))))..... (-31.68 = -31.52 + -0.16)
Location | 12,038,006 – 12,038,098 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -25.52 |
Energy contribution | -27.12 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.88 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12038006 92 + 27905053 CGUGUAGUACUGCCAUGAGAUAUUUUUUUGGGACGUUCCCAGAGUUCAGGCUCGGUACGGUACGGUUUGGUUCGUCACUCGGCAAGCAAACA ((((..((((((((.((((......(((((((.....))))))))))))))..)))))..))))(((((.((.(((....))))).))))). ( -31.30) >DroSec_CAF1 9307 92 + 1 CGUGUAGUACUGCCAUGAGAUAUUUUUUUGGGACGUUCCCAGAGUUCAGGCUCGGUACGGUACGGUUUGGUUCGUCACUCGGCAAGCAAACA ((((..((((((((.((((......(((((((.....))))))))))))))..)))))..))))(((((.((.(((....))))).))))). ( -31.30) >DroSim_CAF1 9344 92 + 1 CGUGUAGUACUGCCAUGAGAUAUUUUUUUGGGACGUUCCCAGAGUUCAGGCUCGGUACGGUACGGUUUGGUUCGUCACUCGGCAAGCAAACA ((((..((((((((.((((......(((((((.....))))))))))))))..)))))..))))(((((.((.(((....))))).))))). ( -31.30) >DroEre_CAF1 8570 85 + 1 CGUGUAGUACUGCCAUGAGAUAUUU-UUUGGGACGUUCCCAGAGUUCAGGCUCGGUACGG------UUGGUUCGUCACUCGGCAAGCAAACA ......((((((((.((((.....(-((((((.....))))))))))))))..))))).(------((.(((.(((....))).))).))). ( -24.80) >DroYak_CAF1 8883 92 + 1 CGUGUAGUACUGCCAUGAGAUAUUUUUUUGGGACGUUCCCAGAGUUCAGGCUCGGUACGGUAAGGUUUGGUUCGUCACUCGGCAAGCAAACA ......((((((((.((((......(((((((.....))))))))))))))..)))))......(((((.((.(((....))))).))))). ( -26.70) >consensus CGUGUAGUACUGCCAUGAGAUAUUUUUUUGGGACGUUCCCAGAGUUCAGGCUCGGUACGGUACGGUUUGGUUCGUCACUCGGCAAGCAAACA ((((..((((((((.((((......(((((((.....))))))))))))))..)))))..))))(((((.((.(((....))))).))))). (-25.52 = -27.12 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:44 2006