Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,034,117 – 12,034,235 |
Length | 118 |
Max. P | 0.953300 |
Location | 12,034,117 – 12,034,235 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -34.57 |
Energy contribution | -34.78 |
Covariance contribution | 0.21 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.90 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12034117 118 + 27905053 UGGGGCAGAAGGUUGACGGUGGCUGGGCUGGUUGCUUGGCCAAGUGGAUGGGGGGCAGCAACGACGAAACGUCGAAAGAAAACAAGAAACUCCAGCAGCAGUGGCCCAAGGGGAUGGG ..((((.....((((((..((((..(((.....)))..)))).))...((((((....)..(((((...)))))...............))))).))))....))))........... ( -38.30) >DroSec_CAF1 5505 118 + 1 UGGGGCAGAAGGUUGACGGUGGCUGGGCUGGUUGCUUGGCCAAGUGGAUGGGGGGCAGCAACGACGAAACGUCGAAAGAAAACAAGAAACUCCAGCAGCAGUGGCCCAAGGGGAUGGG ..((((.....((((((..((((..(((.....)))..)))).))...((((((....)..(((((...)))))...............))))).))))....))))........... ( -38.30) >DroSim_CAF1 5525 118 + 1 UGGGGCAGAAGGCUGACGGUGGCUGGGCUGGUUGCUUGGCCAAGUGGAUGGGGGGCAGCAACGACGAAACGUCGAAAGAAAACAAGAAACUCCAGCAGCAGUGGCCCAAGGGGAUGGG ..((((.....((((((..((((..(((.....)))..)))).))...((((((....)..(((((...)))))...............))))).))))....))))........... ( -40.70) >DroEre_CAF1 4714 110 + 1 UGGGGCAGAAGGUUGACGGUGGCUGGGCUGGCUGCUUG--------GAUGGGGGGCAGCAACGACGAAACGUCGAAAGAAAACAAGAAACUCCAGCAGCAGUGGCCCAAGAGGAUGGG ((((.((...(.....).((.(((((((((.((.((..--------...)).)).))))..(((((...))))).................))))).))..)).)))).......... ( -35.70) >DroYak_CAF1 4941 118 + 1 UGGGGCAGAAGGUUGACGGUGGCUGGGCUGGCAGCUUGGCCAAGUGGAGGGGGGGCAGCAACGACGAAACGUCGAAAGAAAACAAGAAACUCCAGCAGCAGUGGCCCAAGAGGAUGGG ..((((.....((((.(..((((..(((.....)))..))))..(((((..(......)..(((((...)))))...............))))))))))....))))........... ( -38.10) >consensus UGGGGCAGAAGGUUGACGGUGGCUGGGCUGGUUGCUUGGCCAAGUGGAUGGGGGGCAGCAACGACGAAACGUCGAAAGAAAACAAGAAACUCCAGCAGCAGUGGCCCAAGGGGAUGGG ((((.((...(.....).((.(((((((((.((.((...((....))..)).)).))))..(((((...))))).................))))).))..)).)))).......... (-34.57 = -34.78 + 0.21)
Location | 12,034,117 – 12,034,235 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -24.30 |
Energy contribution | -24.86 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.17 |
Structure conservation index | 0.88 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12034117 118 - 27905053 CCCAUCCCCUUGGGCCACUGCUGCUGGAGUUUCUUGUUUUCUUUCGACGUUUCGUCGUUGCUGCCCCCCAUCCACUUGGCCAAGCAACCAGCCCAGCCACCGUCAACCUUCUGCCCCA ((((......))))........(((((.(((..............((((...))))((((((.....(((......)))...)))))).))))))))..................... ( -27.70) >DroSec_CAF1 5505 118 - 1 CCCAUCCCCUUGGGCCACUGCUGCUGGAGUUUCUUGUUUUCUUUCGACGUUUCGUCGUUGCUGCCCCCCAUCCACUUGGCCAAGCAACCAGCCCAGCCACCGUCAACCUUCUGCCCCA ((((......))))........(((((.(((..............((((...))))((((((.....(((......)))...)))))).))))))))..................... ( -27.70) >DroSim_CAF1 5525 118 - 1 CCCAUCCCCUUGGGCCACUGCUGCUGGAGUUUCUUGUUUUCUUUCGACGUUUCGUCGUUGCUGCCCCCCAUCCACUUGGCCAAGCAACCAGCCCAGCCACCGUCAGCCUUCUGCCCCA ...........((((....((((((((.(((..............((((...))))((((((.....(((......)))...)))))).)))))))).......))).....)))).. ( -30.41) >DroEre_CAF1 4714 110 - 1 CCCAUCCUCUUGGGCCACUGCUGCUGGAGUUUCUUGUUUUCUUUCGACGUUUCGUCGUUGCUGCCCCCCAUC--------CAAGCAGCCAGCCCAGCCACCGUCAACCUUCUGCCCCA .........((((((....(((((((((.......((.......(((((...))))).....))......))--------).))))))..))))))...................... ( -27.22) >DroYak_CAF1 4941 118 - 1 CCCAUCCUCUUGGGCCACUGCUGCUGGAGUUUCUUGUUUUCUUUCGACGUUUCGUCGUUGCUGCCCCCCCUCCACUUGGCCAAGCUGCCAGCCCAGCCACCGUCAACCUUCUGCCCCA ((((......)))).....(((((((((((((............(((((...))))).....(((............))).))))).)))))..)))..................... ( -24.70) >consensus CCCAUCCCCUUGGGCCACUGCUGCUGGAGUUUCUUGUUUUCUUUCGACGUUUCGUCGUUGCUGCCCCCCAUCCACUUGGCCAAGCAACCAGCCCAGCCACCGUCAACCUUCUGCCCCA ((((......))))........(((((.(((..............((((...))))(((((((((............)))..)))))).))))))))..................... (-24.30 = -24.86 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:41 2006