Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,032,804 – 12,032,903 |
Length | 99 |
Max. P | 0.738255 |
Location | 12,032,804 – 12,032,903 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -20.76 |
Consensus MFE | -10.69 |
Energy contribution | -10.97 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.51 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12032804 99 - 27905053 CAACA---ACACAAACCUCCUAUAUGAGUGCGCCCCGUACAU----ACAUACAUAUAUGUACGAAUGUAUAUU--UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU .....---.......((..(((((((((((..(..(((((((----(........))))))))...)..))))--)))))))((((((........))).)))))... ( -26.40) >DroSec_CAF1 4175 101 - 1 CAACA---ACACAAACCUCCUA--UGAGUGCGCCCCGUACAUGCAUACAUACAUAUAUGUUCGAAUGUAUAUU--UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU .....---.........(((..--..(((((((...((...(((..(((((....)))))..((.(((((...--.)))))...)))))...))..)))))))))).. ( -21.10) >DroEre_CAF1 3322 87 - 1 CAACA---ACAGAAACCUCCUAUAUGAGUGCGCCCCGUACAUA----------------UACGAAUGUAUAUU--UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU .....---.......((..(((((((((((((...)))))(((----------------(((....)))))))--)))))))((((((........))).)))))... ( -19.90) >DroYak_CAF1 3522 89 - 1 CAACA---ACACAAACCUCCUAUAUGAGUGCGCCACGUACAUA----------------UACGAAUGUAUAUUUUUAUAUAGAGUCGCAGCAACACGCGCACUGGAUU .....---.......((..(((((((((((((...)))))(((----------------(((....))))))..))))))))((((((........))).)))))... ( -19.90) >DroAna_CAF1 3141 89 - 1 CAAAAACAAUAACAACAACCUAUAUGAAUGUGGC-CGUACAUA----------------UAGAAGCGUAUAUU--UAUAUAGAGUCGCCGCAACACGCGCACUGGAAU ...................(((((((((((((((-........----------------.....)).))))))--)))))))((((((........))).)))..... ( -16.52) >consensus CAACA___ACACAAACCUCCUAUAUGAGUGCGCCCCGUACAUA________________UACGAAUGUAUAUU__UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU ........................(.(((((((...((((((......................)))))).............((....)).....))))))).)... (-10.69 = -10.97 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:39 2006