Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,023,927 – 12,024,102 |
Length | 175 |
Max. P | 0.758762 |
Location | 12,023,927 – 12,024,022 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.65 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -21.53 |
Energy contribution | -21.78 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.30 |
Mean z-score | -2.76 |
Structure conservation index | 0.69 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.758762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12023927 95 + 27905053 UUCUACUUGCUCUCGAUGUUCUUGAGCGGCACCAUUUGCUCCGGAUCGUCGGGAUAUACGCUAUUCUGGCGCUUUUUGCGACCAGCACACUGACU .((....(((((((((((.(((.((((((......)))))).))).))))))))............((((((.....))).))))))....)).. ( -31.00) >DroVir_CAF1 12420 95 + 1 UAUUAUUUGGUUUCAAUAGUUUUGAGCGGCACCAUUUGUUCUGGAUCGUCGGGAUAAGUACUGUCCUGGCGCUGUUUGGGACCAGCACAUUGACU ......(((((..(((.........(((((.(((.......)))...(((((((((.....)))))))))))))))))..))))).......... ( -29.80) >DroPse_CAF1 10552 95 + 1 CUUCAUUUGCUUUCGAUAUUCUUGAGCGGCACCAUCUGCUCGGGAUCGUCCGGGUAAAUACUAUUCUGGCGCUUCUUGCGACCAGCACACUGACU ....((((((((..(((..((((((((((......))))))))))..))).))))))))......(((((((.....))).)))).......... ( -31.60) >DroGri_CAF1 2686 95 + 1 UUCUAUUUGCUUUCAAUGUUUUUCAGCGGUACCAUUUGCUCGGGAUCGUCGGGAUAAAUACUAUCCUGUCGCUGUUUGCGACCAGCACAUUGACU ............(((((((....(((((((.((........)).)))(.(((((((.....))))))).)))))...((.....))))))))).. ( -25.90) >DroMoj_CAF1 10730 95 + 1 UCUUAUUUACUUUCGAUGGUCUUGAGCGGCACCAUUUGCUCAGGAUCGUCGGGAUAAAUACUAUCCUGGCGUGGCUUCCGGCCAGCACAUUGGCU ...((((((.(..((((((((((((((((......))))))))))))))))..))))))).....(((((.(((...)))))))).......... ( -37.70) >DroPer_CAF1 10565 95 + 1 CUUCAUUUGCUUUCGAUAUUCUUGAGCGGCACCAUCUGCUCGGGAUCGUCCGGGUAAAUACUAUUCUGGCGCUUCUUGCGACCAGCACACUGACU ....((((((((..(((..((((((((((......))))))))))..))).))))))))......(((((((.....))).)))).......... ( -31.60) >consensus UUUUAUUUGCUUUCGAUAUUCUUGAGCGGCACCAUUUGCUCGGGAUCGUCGGGAUAAAUACUAUCCUGGCGCUGCUUGCGACCAGCACACUGACU .......((((.(((....((((((((((......)))))))))).((((((((((.....)))))))))).......)))..))))........ (-21.53 = -21.78 + 0.25)
Location | 12,023,982 – 12,024,102 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.61 |
Mean single sequence MFE | -41.92 |
Consensus MFE | -32.32 |
Energy contribution | -32.60 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.30 |
Mean z-score | -1.68 |
Structure conservation index | 0.77 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12023982 120 - 27905053 UCCUGCCGGAGACAAUGAACCAGCCCAUGCCCGAGUCCAUUGAGGAUGGAGAGAACUUCGGAAAGGGAGAUACUUGGUUCAGUCAGUGUGCUGGUCGCAAAAAGCGCCAGAAUAGCGUAU (((....)))(((..((((((((......(((..((((.....))))((((....)))).....)))......))))))))))).((...((((.(((.....)))))))....)).... ( -37.80) >DroVir_CAF1 12475 120 - 1 UCCUGCCAGAGACAAUGAACAAGCCCAUGCCAGAGUCCAUUGAGGAUGGCGAGAACUUUGGCAAGGGCGACACCUGGUUCAGUCAAUGUGCUGGUCCCAAACAGCGCCAGGACAGUACUU (((((.....(((..(((((..((((.((((((((((((((...))))).....))))))))).))))..(....)))))))))...((((((........)))))))))))........ ( -46.00) >DroGri_CAF1 2741 120 - 1 UCUUACCGGAAACAAUGAACCAGCCGAUGCCAGAGUCCAUUGAGGAUGGCGAGAACUUUGGCAAGGGCGAUACCUGGUUCAGUCAAUGUGCUGGUCGCAAACAGCGACAGGAUAGUAUUU .......(....)..((((((((((..((((((((((((((...))))).....)))))))))..)))......))))))).....(((.(((.((((.....))))))).)))...... ( -40.30) >DroWil_CAF1 2144 120 - 1 UUUUGCCGGAGACAAUGAAUCAACCGAUGCCCGAAUCAAUUGAGGAUGGUGAAAACUUUGGCAAAGGUGAUACUUGGUUCAGUCAGUGUGCUGGUCGUAAACCACGACAGAAUAGUAUUU (((((((((((.......(((....)))(((....((....))....))).....)))))))))))..((((((..((((...(((....)))(((((.....))))).)))))))))). ( -30.40) >DroMoj_CAF1 10785 120 - 1 UCCUGCCGGAAACAAUGAACAAGCCCAUGCCAGAGUCCAUUGAGGAUGGCGAGAACUUUGGCAAGGGUGACACCUGGUUCAGCCAAUGUGCUGGCCGGAAGCCACGCCAGGAUAGUAUUU (((((.((..............((((.((((((((((((((...))))).....))))))))).)))).....(((((.((((......)))))))))......)).)))))........ ( -43.30) >DroAna_CAF1 2241 120 - 1 UCCUGCCGGAGACAAUGAACCAGCCCAUGCCGGAGUCCAUCGAGGACGGCGAGAACUUCGGCAAGGGCGACACCUGGUUCAGCCAGUGUGCCGGCCGGAAGCAGCGCCAGGACAGCGUCU (((.(((((..(((.(((((((((((.(((((((((...(((.......)))..))))))))).))))......))))))).....))).))))).)))....((((.......)))).. ( -53.70) >consensus UCCUGCCGGAGACAAUGAACCAGCCCAUGCCAGAGUCCAUUGAGGAUGGCGAGAACUUUGGCAAGGGCGACACCUGGUUCAGUCAAUGUGCUGGUCGCAAACAGCGCCAGGAUAGUAUUU (((((((((..(((.(((((((((((.((((((((((((((...))))).....))))))))).)))......)))))))).....))).)))))(((.....)))..))))........ (-32.32 = -32.60 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:34 2006