Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,022,583 – 12,022,680 |
Length | 97 |
Max. P | 0.500000 |
Location | 12,022,583 – 12,022,680 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.90 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -19.08 |
Energy contribution | -19.97 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.09 |
Mean z-score | -1.96 |
Structure conservation index | 0.67 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12022583 97 + 27905053 GGACUGCAGGUGAAGGCGCCAAUUGUCCAGACCAAGUGCCCGGAACGGGCAUAAUCAUAAGGUGGUGACGAAACUA-AAGCUGAAAACCUGAGUUGUA .((((.(((((...(((.....(((((...(((..(((((((...))))))).(((....))))))))))).....-..)))....)))))))))... ( -31.00) >DroGri_CAF1 808 87 + 1 GCAGUACAGCCCAAAGCACCCAUUGUACAAACCAAAUGCCCGGAGCGCGCAUAAGCGCCA----------AGGCUUUGAGCUUAAAAC-UGAAUUGUU (((((.(((....((((((.....))......((((.(((..(.((((......))))).----------.))))))).))))....)-)).))))). ( -23.50) >DroSec_CAF1 826 97 + 1 GGACUGCAGGUGAAGGCGCCAAUUGUCCAGACCAAGUGCCCGGAACGGGCAUAAUCAUUAGGUGAAGACGAAACUA-AAGCUGAAAACCUGAGUUGUA .((((.(((((...(((.....(((((........(((((((...)))))))..((((...)))).))))).....-..)))....)))))))))... ( -29.50) >DroSim_CAF1 832 97 + 1 GGACUGCAGGUGAAGGCGCCAAUUGUCCAGACCAAGUGCCCGGAACGGGCAUAAUCAUUAGGUGAAGACGAAACUA-AAGCUGAAAACCUGAGUUGUA .((((.(((((...(((.....(((((........(((((((...)))))))..((((...)))).))))).....-..)))....)))))))))... ( -29.50) >DroEre_CAF1 826 97 + 1 GGACUCCAGGUGAAGGCGCCAAUUGUCCAGACCAAGUGCCCGGAACGGGCAUAAUCAUUACGUGGACACGAAACUA-AAGCUGAAAACCUGAGUUUUA ((((((.((((...(((......((((((......(((((((...)))))))..........))))))........-..)))....)))))))))).. ( -28.88) >DroYak_CAF1 826 97 + 1 GGACUCCAGGUGAAGGCACCAAUUGUCCAGACCAAGUGCCCGGAACGGGCAUAAUCAUUAGGUGCAGACGAAACUA-UAGCUGAAAACCCGAGUUUUA ((((....((((....))))....))))(((((..(((((((...)))))))........(((.(((.(.......-..))))...))).).)))).. ( -27.80) >consensus GGACUGCAGGUGAAGGCGCCAAUUGUCCAGACCAAGUGCCCGGAACGGGCAUAAUCAUUAGGUGAAGACGAAACUA_AAGCUGAAAACCUGAGUUGUA .((((.(((((...(((.....(((.......)))(((((((...)))))))...........................)))....)))))))))... (-19.08 = -19.97 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:29 2006