Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,019,834 – 12,019,945 |
Length | 111 |
Max. P | 0.720109 |
Location | 12,019,834 – 12,019,945 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 91.14 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -18.35 |
Energy contribution | -18.48 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.76 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12019834 111 - 27905053 UCACUUUUCUUUUAUGGCUAUUUUAUUUUUUGUUGACUUUCACCUCAACGCAGGUCAGCAGAGCAACAACAGUAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA ..............(((((.(((((((((((((((((((.(........).))))))))))))........((.(((......))).))))))))).....)))))..... ( -24.20) >DroSec_CAF1 124716 111 - 1 UCACUUUCCUUUAAUGGCCAUUUUCUUUUUUGUUGACUUUCACCUCAACGCAGGCGAGCAAAGCAACAACAGCAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA ..............(((((............(((((........)))))((.((((.((............))...))))...))................)))))..... ( -22.90) >DroSim_CAF1 125017 111 - 1 UCACUUUCCUUUUAUGGCCAUUUUCUUUUUUGUUGACUUUCACCUCAACGCAGGCGAGCAGAGCAACAACAGCAAGCGGCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA ..............(((((..........((((((.(((((.(((......))).))...))))))))).....(((......)))...............)))))..... ( -22.90) >DroYak_CAF1 127758 107 - 1 UCACUUUCCUUUUAUGGCCAUUU----UUUUGUUGACUUUUACCUCGACGCAGAGGAGUAGAGCAAAAACAGCAAGCGGGGUAGCUAACAAUAAAAACAAAGGCCAAAAAA ..............(((((.(((----((((((((....((((((((((........))...((.......))...))))))))....))))))))).)).)))))..... ( -26.00) >consensus UCACUUUCCUUUUAUGGCCAUUUUCUUUUUUGUUGACUUUCACCUCAACGCAGGCGAGCAGAGCAACAACAGCAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA ..............(((((..........((((((.((((...(((.........))).)))))))))).....(((......)))...............)))))..... (-18.35 = -18.48 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:28 2006