Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,019,382 – 12,019,474 |
Length | 92 |
Max. P | 0.793478 |
Location | 12,019,382 – 12,019,474 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -25.43 |
Consensus MFE | -19.47 |
Energy contribution | -20.25 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.77 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12019382 92 + 27905053 -GGCAGCAACCACUUGAUAUAAUGAUGACAGCAAUUAUGAAUGAGUGAAGGUCGUUGGCUAACGACCGGCAG---GCAAUUCAUCAUCAUGUCGAA------------------------ -((......))..(((((((.(((((((((.......))..((..((..(((((((....)))))))..)).---.))..))))))).))))))).------------------------ ( -27.00) >DroGri_CAF1 141391 93 + 1 GCCUGGGACCCACUUGAUAUAAUGAUGACAGCAAUUAUGAAUGAGUGAAGGUCGCAGGAUAACGGCAGUCAG---GCAAUUCAUCAUCAUGUUGAG------------------------ (((((((((((((((..((((((..........))))))...)))))..))))((.(.....).))..))))---))......(((......))).------------------------ ( -23.70) >DroSec_CAF1 124258 92 + 1 -GACAGCAACCACUUGAUAUAAUGAUGACAGCAAUUAUGAAUGAGUGAAGGUCGUUGGCUAACGACCGGCAG---GCAAUUCAUCAUCAUGUCGAA------------------------ -............(((((((.(((((((((.......))..((..((..(((((((....)))))))..)).---.))..))))))).))))))).------------------------ ( -26.30) >DroEre_CAF1 124080 92 + 1 -GGCGGCAACCACUUGAUAUAAUGAUGACAGCAAUUAUGAAUGAGUGAAGGUCGUUGGCUAACGACCGGCAG---GCAAUUCAUCAUCAUGUCGAA------------------------ -((......))..(((((((.(((((((((.......))..((..((..(((((((....)))))))..)).---.))..))))))).))))))).------------------------ ( -27.00) >DroWil_CAF1 140361 119 + 1 -GGUAACGACCACUUGAUCUAAUGAUGACAGCAAUUAUGAAUGAAUGAAGGUCGCUGCAUAACAACAGGCAAAGCGCAAUUCAUCAUCAUGACGGAGUGUAAUAUUCAACCACUUUAUUU -(((......(((((..((..(((((((((.......))..(((((....(.((((((..........))..))))).))))))))))))))..))))).........)))......... ( -20.36) >DroYak_CAF1 127304 92 + 1 -GGUUAAAACCACUUGAUAUAAUGAUGACAGCAAUUAUGAAUGAGUGAAGGUCGUUGGCUAACGACCGGCAG---GCAAUUCAUCAUCAUGUCGAA------------------------ -(((....)))..(((((((.(((((((((.......))..((..((..(((((((....)))))))..)).---.))..))))))).))))))).------------------------ ( -28.20) >consensus _GGCAGCAACCACUUGAUAUAAUGAUGACAGCAAUUAUGAAUGAGUGAAGGUCGUUGGCUAACGACCGGCAG___GCAAUUCAUCAUCAUGUCGAA________________________ .............(((((((.(((((((..((..((((......)))).(((((((....)))))))........))...))))))).)))))))......................... (-19.47 = -20.25 + 0.78)
Location | 12,019,382 – 12,019,474 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -21.74 |
Consensus MFE | -16.54 |
Energy contribution | -17.35 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.09 |
Mean z-score | -1.12 |
Structure conservation index | 0.76 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12019382 92 - 27905053 ------------------------UUCGACAUGAUGAUGAAUUGC---CUGCCGGUCGUUAGCCAACGACCUUCACUCAUUCAUAAUUGCUGUCAUCAUUAUAUCAAGUGGUUGCUGCC- ------------------------...((.((((((((((...((---.((..(((((((....)))))))..)).............))..)))))))))).))....(((....)))- ( -22.94) >DroGri_CAF1 141391 93 - 1 ------------------------CUCAACAUGAUGAUGAAUUGC---CUGACUGCCGUUAUCCUGCGACCUUCACUCAUUCAUAAUUGCUGUCAUCAUUAUAUCAAGUGGGUCCCAGGC ------------------------........(((((((....((---......)))))))))(((.((((..((((.....(((((..........)))))....)))))))).))).. ( -15.10) >DroSec_CAF1 124258 92 - 1 ------------------------UUCGACAUGAUGAUGAAUUGC---CUGCCGGUCGUUAGCCAACGACCUUCACUCAUUCAUAAUUGCUGUCAUCAUUAUAUCAAGUGGUUGCUGUC- ------------------------...((.((((((((((...((---.((..(((((((....)))))))..)).............))..)))))))))).)).(((....)))...- ( -22.14) >DroEre_CAF1 124080 92 - 1 ------------------------UUCGACAUGAUGAUGAAUUGC---CUGCCGGUCGUUAGCCAACGACCUUCACUCAUUCAUAAUUGCUGUCAUCAUUAUAUCAAGUGGUUGCCGCC- ------------------------...((.((((((((((...((---.((..(((((((....)))))))..)).............))..)))))))))).))..((((...)))).- ( -24.44) >DroWil_CAF1 140361 119 - 1 AAAUAAAGUGGUUGAAUAUUACACUCCGUCAUGAUGAUGAAUUGCGCUUUGCCUGUUGUUAUGCAGCGACCUUCAUUCAUUCAUAAUUGCUGUCAUCAUUAGAUCAAGUGGUCGUUACC- .........((((((......((((..(((.(((((((((...((((...)).(((((.....)))))....................))..))))))))))))..)))).)))..)))- ( -23.70) >DroYak_CAF1 127304 92 - 1 ------------------------UUCGACAUGAUGAUGAAUUGC---CUGCCGGUCGUUAGCCAACGACCUUCACUCAUUCAUAAUUGCUGUCAUCAUUAUAUCAAGUGGUUUUAACC- ------------------------...((.((((((((((...((---.((..(((((((....)))))))..)).............))..)))))))))).))....(((....)))- ( -22.14) >consensus ________________________UUCGACAUGAUGAUGAAUUGC___CUGCCGGUCGUUAGCCAACGACCUUCACUCAUUCAUAAUUGCUGUCAUCAUUAUAUCAAGUGGUUGCUACC_ ...........................((.((((((((((...((....((..(((((((....)))))))..)).............))..)))))))))).))............... (-16.54 = -17.35 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006