Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,019,148 – 12,019,266 |
Length | 118 |
Max. P | 0.995245 |
Location | 12,019,148 – 12,019,266 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.56 |
Mean single sequence MFE | -33.60 |
Consensus MFE | -29.06 |
Energy contribution | -29.82 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.12 |
Mean z-score | -2.17 |
Structure conservation index | 0.86 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12019148 118 + 27905053 ACAUGAAUUUGUU-UAUAUCCCUUUGUUGCUGAUUUUU-UUUUGAGUGGCCCACUGAAGCCGUCUCAAAUGAUUUAGAGAGCUUUUGCGUGUCUUUGAGGUGGCUUACAUGCGGGCUACU ....(((((.((.-.(((......))).)).)))))..-.....((((((((.((((((((..((((((.(((.......((....))..)))))))))..))))).)).).)))))))) ( -36.50) >DroSec_CAF1 124022 117 + 1 ACACAAAUUUGUU-UAUAUCCCAUUGUUGCUGAUUUU--UUUUGAGUGGCCCACUGAAGCUGUCUCAAAUGAUUUAGAGAGCUUUUGCGUGUCUUUGAGGUGGCUUACAUGCGGGCUACU ....(((((.((.-.(((......))).)).))))).--.....((((((((.(((((((..(((((((.(((.......((....))..))))))))))..)))).)).).)))))))) ( -35.10) >DroSim_CAF1 124321 119 + 1 ACACAAAUUUGUU-UAUAUCCCUUUGUUGCUGAUUUUUUUUUUGAGUGGCCCACUGAAGCCGUCUCAAAUGAUUUAGAGAGCUUUUGCGUGUCUUUGAGGUGGCUUACAUGCGGGCUACU ....(((((.((.-.(((......))).)).)))))........((((((((.((((((((..((((((.(((.......((....))..)))))))))..))))).)).).)))))))) ( -36.20) >DroEre_CAF1 123842 117 + 1 ACACAUAUUUGUU-UACAUCCUUUUGUUGCUGAUUUU--UUUUGAGUGGCCCAAGGAUGCCGUCUAAAAUGAUUUAAAGAGCUUUUGCGUGUCUUUGAGGUGGCUUACAUGCGGGCUACU ...(((.((.(..-..(((((((..((..((.(....--...).))..))..)))))))....).)).))).((((((((((....))...))))))))(((((((......))))))). ( -28.50) >DroYak_CAF1 127073 116 + 1 AAACAAAUAUGUUUUUUAUCCCUUUGUUGCUGGUUU----UUUGAGUGGCCCAAGGAUGCCGUCUAAAAUGAUAUAAAGAGCUUUUGCGUGUCUUUGAGGUGGCUUACAUGCGGGCUACU (((((....)))))...........((.(((.((..----..(((((.((((((((((((.(((......))).......((....))))))))))).))).)))))...)).))).)). ( -31.70) >consensus ACACAAAUUUGUU_UAUAUCCCUUUGUUGCUGAUUUU__UUUUGAGUGGCCCACUGAAGCCGUCUCAAAUGAUUUAGAGAGCUUUUGCGUGUCUUUGAGGUGGCUUACAUGCGGGCUACU ....(((((.((...(((......))).)).)))))........((((((((....(((((..((((((.(((.......((....))..)))))))))..)))))......)))))))) (-29.06 = -29.82 + 0.76)
Location | 12,019,148 – 12,019,266 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.56 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -18.30 |
Energy contribution | -20.10 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.77 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12019148 118 - 27905053 AGUAGCCCGCAUGUAAGCCACCUCAAAGACACGCAAAAGCUCUCUAAAUCAUUUGAGACGGCUUCAGUGGGCCACUCAAAA-AAAAAUCAGCAACAAAGGGAUAUA-AACAAAUUCAUGU (((.((((((.((.(((((..((((((((...((....))..))).......)))))..))))))))))))).))).....-...........(((...((((...-.....)))).))) ( -27.61) >DroSec_CAF1 124022 117 - 1 AGUAGCCCGCAUGUAAGCCACCUCAAAGACACGCAAAAGCUCUCUAAAUCAUUUGAGACAGCUUCAGUGGGCCACUCAAAA--AAAAUCAGCAACAAUGGGAUAUA-AACAAAUUUGUGU (((.((((((.((.((((...((((((((...((....))..))).......)))))...)))))))))))).))).....--..................(((((-((....))))))) ( -23.81) >DroSim_CAF1 124321 119 - 1 AGUAGCCCGCAUGUAAGCCACCUCAAAGACACGCAAAAGCUCUCUAAAUCAUUUGAGACGGCUUCAGUGGGCCACUCAAAAAAAAAAUCAGCAACAAAGGGAUAUA-AACAAAUUUGUGU (((.((((((.((.(((((..((((((((...((....))..))).......)))))..))))))))))))).)))..............(((.((((.(......-..)...))))))) ( -29.31) >DroEre_CAF1 123842 117 - 1 AGUAGCCCGCAUGUAAGCCACCUCAAAGACACGCAAAAGCUCUUUAAAUCAUUUUAGACGGCAUCCUUGGGCCACUCAAAA--AAAAUCAGCAACAAAAGGAUGUA-AACAAAUAUGUGU .......(((((((..(((.............((....))..((((((....)))))).)))((((((..((.........--.......)).....))))))...-.....))))))). ( -19.19) >DroYak_CAF1 127073 116 - 1 AGUAGCCCGCAUGUAAGCCACCUCAAAGACACGCAAAAGCUCUUUAUAUCAUUUUAGACGGCAUCCUUGGGCCACUCAAA----AAACCAGCAACAAAGGGAUAAAAAACAUAUUUGUUU (((.((((((.(((..............))).))....(((.((((........)))).)))......)))).)))....----........((((((.(.........)...)))))). ( -18.34) >consensus AGUAGCCCGCAUGUAAGCCACCUCAAAGACACGCAAAAGCUCUCUAAAUCAUUUGAGACGGCUUCAGUGGGCCACUCAAAA__AAAAUCAGCAACAAAGGGAUAUA_AACAAAUUUGUGU (((.((((((.((.(((((..((((((((...((....))........)).))))))..))))))))))))).)))............................................ (-18.30 = -20.10 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:25 2006