Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,015,957 – 12,016,076 |
Length | 119 |
Max. P | 0.996725 |
Location | 12,015,957 – 12,016,076 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.53 |
Mean single sequence MFE | -20.77 |
Consensus MFE | -19.28 |
Energy contribution | -18.40 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.17 |
Mean z-score | -1.38 |
Structure conservation index | 0.93 |
SVM decision value | 2.74 |
SVM RNA-class probability | 0.996725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12015957 119 - 27905053 UUUCGAGUGUUUUUUGCAGCAGAAUGGUAAUCAGAAUGCUCUCGGCAAUUCUUUAUUGAACGAC-CGUUCAAUAAAUUUCACAAAAGGAAAUGUUAUCAGCGGGUAUUCUUAAAAUAACU .(((...(((.....)))...)))........(((((((((...((......(((((((((...-.)))))))))(((((.......))))).......))))))))))).......... ( -22.80) >DroSec_CAF1 120842 91 - 1 UU-----------------------------CGGAAUGCUUUCGGAAAUUCUUUAUUGAACAACCCGUUCAGUAAAUUUCACCAAAGGAAAUGUUAUCAGCGGGUAUUCUUAAAAUACCU ..-----------------------------.((((((((..(.((......(((((((((.....)))))))))(((((.......)))))....)).)..)))))))).......... ( -19.40) >DroSim_CAF1 121124 91 - 1 UU-----------------------------CAGAAUGCUUUCGGUAAUUUUUUAUUGAACAACCCGUUCAGUAAAUUUCACCAAAGGAAAUGUUAUCAGCGGGUAUUUUAAAAAUACCU ..-----------------------------......(((...((((((...(((((((((.....)))))))))(((((.......))))))))))))))(((((((.....))))))) ( -20.10) >consensus UU_____________________________CAGAAUGCUUUCGGAAAUUCUUUAUUGAACAACCCGUUCAGUAAAUUUCACCAAAGGAAAUGUUAUCAGCGGGUAUUCUUAAAAUACCU ................................(((((((((.(.........(((((((((.....)))))))))(((((.......))))).......).))))))))).......... (-19.28 = -18.40 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:21 2006