Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,014,491 – 12,014,589 |
Length | 98 |
Max. P | 0.511043 |
Location | 12,014,491 – 12,014,589 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.19 |
Mean single sequence MFE | -16.68 |
Consensus MFE | -10.67 |
Energy contribution | -12.28 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.05 |
Mean z-score | -1.63 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12014491 98 + 27905053 AUUUUUUCUCAAAUAUUAAUUGCUUUGAGCAACAGUAGAAGCCCUUGGCUACUGCUCCAAACCCAAUCACUUCGAAUUUCCGA-AAAUUCCCCAAGCAG-- ....................(((((.(......(((((.((((...)))).)))))..............((((......)))-)......).))))).-- ( -16.50) >DroGri_CAF1 135206 83 + 1 ----AUUUGAAAAUUUUAAUUGCUUUGGGCAACGCGUUGCGCCCUUUGCC---------AACACAGU--UUUUGAAGUAGAAC-CAAUUCCCUUAG--ACA ----........(((((((..(((.(((((((.(((...)))...)))))---------..)).)))--..))))))).....-............--... ( -14.40) >DroSec_CAF1 119777 100 + 1 AUUUUUUCUCAAAUAUUAAUUGCUUUGAGCAACAGUAGAAGCCCUUGGCUACUGCUCCAAACCCAAUCACUUCGAAUUUCCGA-AAAUUCCCCAAGCAGCA ...................((((((.(......(((((.((((...)))).)))))..............((((......)))-)......).)))))).. ( -16.90) >DroSim_CAF1 120021 100 + 1 AUUUUUUCUCAAAUAUUAAUUGCUUUGAGCAACAGUAGAAGCCCUUGGCUACUGCUCCAAACCCAAUCACUUCGAAUUUCCGA-AAAUUCCCCAAGCAGCA ...................((((((.(......(((((.((((...)))).)))))..............((((......)))-)......).)))))).. ( -16.90) >DroEre_CAF1 119616 100 + 1 AUUUUUUCUAAAAUAUUAAUUGCUUUGAGCAACAGUAGAAGCCCUUGGCUACUGCUCCAAACCCAAUCUUUUCGAAUUUCCGA-AAAUUCCCCAAGCAACA ...................((((((.(......(((((.((((...)))).)))))............((((((......)))-)))....).)))))).. ( -18.80) >DroYak_CAF1 122696 101 + 1 AUUUUUUCUCAAAUAUUAAUUGCUUUGAGCAACAGUAGAAGCCCUUGGCUACUGCUUCAAACCCAAUCUUUUCGAAUUUCCAAAAAAUUCCCCAAGCAGCA ...................((((((.(......(((((.((((...)))).))))).................((((((.....)))))).).)))))).. ( -16.60) >consensus AUUUUUUCUCAAAUAUUAAUUGCUUUGAGCAACAGUAGAAGCCCUUGGCUACUGCUCCAAACCCAAUCACUUCGAAUUUCCGA_AAAUUCCCCAAGCAGCA ...................((((((.(......(((((.(((.....))).))))).................((((((.....)))))).).)))))).. (-10.67 = -12.28 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006