Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,013,715 – 12,013,819 |
Length | 104 |
Max. P | 0.999894 |
Location | 12,013,715 – 12,013,819 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 97.88 |
Mean single sequence MFE | -35.18 |
Consensus MFE | -34.04 |
Energy contribution | -34.20 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.87 |
Structure conservation index | 0.97 |
SVM decision value | 4.42 |
SVM RNA-class probability | 0.999894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12013715 104 - 27905053 CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA .......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). ( -37.00) >DroSec_CAF1 119036 104 - 1 CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAAGACUUUAAAACACGAGCCA .......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..))......................... ( -34.30) >DroSim_CAF1 119267 104 - 1 CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA .......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). ( -37.00) >DroEre_CAF1 118825 104 - 1 CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAAUUAUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA .......((..(((((((......(((((((......((.......)).))))))).(......)...)))))))..)).....((.(((........))))). ( -32.60) >DroYak_CAF1 121963 104 - 1 CAAGCAUUCUGCUCCCACGCAAUAGCAGCAGGAAUUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA .......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). ( -35.00) >consensus CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA .......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). (-34.04 = -34.20 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006