| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,012,422 – 12,012,525 |
| Length | 103 |
| Max. P | 0.618412 |
| Location | 12,012,422 – 12,012,525 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.34 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -13.86 |
| Energy contribution | -13.42 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12012422 103 - 27905053 AACGA--UAUACCGCAGAAUAGGGAGACAUGGCCAACGUGGAAUCUAUGAUUGUGGAGGAAAAGACGCAGGUCAAGCAGAUUGACCGCGAGAAGGUUUGUUU-GUG (((((--....((((((.(((((....((((.....))))...)))))..)))))).........(((.((((((.....))))))))).......))))).-... ( -29.00) >DroVir_CAF1 135259 101 - 1 AAAGAAGACUAAUAGACAA-----AAACAUGGCUAAUGUUGAGUCGAUGAUUGUGGAAGAGAAGACACAGAUCAAGCAAAUUGAUCGCGAGAAGGUUUGUUUUAAU ..............(((..-----.(((((.....)))))..)))..((((((((..........)))).))))((((((((..((....)).))))))))..... ( -20.10) >DroPse_CAF1 126592 93 - 1 GAAAA--UAUAAC-----------CAAUAUGGCCAACGUAGAGUCAAUGAUUGUGGAGGAAAAGACGCAGGUCAAGCAGAUCGAUCGCGAGAAGGUUUGUUUUUCU (((((--......-----------.....(((((..(((....((.((....))....))....)))..))))).(((((((..((....)).)))))))))))). ( -20.10) >DroEre_CAF1 117551 104 - 1 AACAU--UAAAUCGCAGAACAGGGAGACAUGGCCAACGUGGAGUCUAUGAUUGUGGAGGAGAAGACGCAGGUCAAGCAAAUUGACCGCGAGAAGGUUUGUUUGAUG ..(((--((((((((((..((.(((..((((.....))))...))).)).)))))..........(((.((((((.....))))))))).........)))))))) ( -26.30) >DroYak_CAF1 120670 104 - 1 UACAA--UAAAUCGCAGAUCAGGAAGACAUGGCCAACGUCGAGUCUAUGAUUGUGGAGGAAAAGACGCAGGUCAAGCAGAUUGACCGCGAAAAGGUUUGUUUGAUU ...((--((((((((((.(((...((((.((((....)))).)))).)))))))...........(((.((((((.....)))))))))....))))))))..... ( -28.70) >DroPer_CAF1 125320 93 - 1 GAAAA--UAUAAC-----------CAAUAUGGCCAACGUAGAGUCAAUGAUUGUGGAGGAAAAGACGCAGGUGAAGCAGAUCGAUCGCGAGAAGGUUUGUUUCGCU .....--......-----------.....(((((......).))))....(((((..........)))))((((((((((((..((....)).)))))))))))). ( -23.50) >consensus AAAAA__UAUAACGCAGAA_____AAACAUGGCCAACGUAGAGUCUAUGAUUGUGGAGGAAAAGACGCAGGUCAAGCAGAUUGACCGCGAGAAGGUUUGUUUGAUU ........................(((((.((((..(((............((((..........))))((((((.....)))))))))....))))))))).... (-13.86 = -13.42 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:18 2006