Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,724,370 – 1,724,471 |
Length | 101 |
Max. P | 0.805064 |
Location | 1,724,370 – 1,724,471 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 75.88 |
Mean single sequence MFE | -20.94 |
Consensus MFE | -4.08 |
Energy contribution | -3.92 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.45 |
Mean z-score | -1.80 |
Structure conservation index | 0.19 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1724370 101 + 27905053 GAAAUGAGAUGCCACAUAUUUUUUGGUUUGGUUGGCAUCUUGUGGGGAGAAAGUUCUAUCAGAGAACGCAAUAGAAUACUAAUUGUCUUUUU-CAUAUAGAA .....(((((((((((.(((....))).))..)))))))))(((..(((...(((((.....)))))(((((((....)).))))).)))..-)))...... ( -23.80) >DroSec_CAF1 33571 93 + 1 GAAAUAAGAUUCCACAUAUUUU--------GUUGGUAUCUUGUAGGGCGAAAGUUCUAUCAGAGAGCGCAAUCGAAUACUAAUUGUGUAUUU-CAUAUAAAA ((.(((((((.(((((.....)--------).))).)))))))(((((....))))).)).(((((((((((.........))))))).)))-)........ ( -23.70) >DroSim_CAF1 34621 93 + 1 GAAAUGAGAUUCCACAUAUUUU--------GUUGGUAUCUUGUAGGGCGAAAGUUCUAUCAGAGAGCGCAAUCGAAUACUAAUUGUUUAUUU-CAUAUAGAA ((((((((........(((((.--------((((((.(((.(((((((....))))))).)))..)).)))).))))).......)))))))-)........ ( -24.66) >DroEre_CAF1 33210 81 + 1 -----------CCACACAUUUU--------GUUGGUAUCUUGUAAGGAGA-AGAUCUGUCAGGAAUGGCAAAUGAGUAGUAAUUAUUUGUUU-CAUAUAAAC -----------(((.((.....--------)))))..(((((...(((..-...)))..)))))(((((((((((.......))))))))..-)))...... ( -13.50) >DroYak_CAF1 33359 94 + 1 GAAAUGAGAUUCCAUAUAUUUU--------GUUCGUUUCUUGUAGAGAGAAAGUUCUAUCAGCAGAAGCAAACGAAUACUAAUUAUUCAUUUGCUUAAAAAC ((((((((..............--------.))))))))((((.((.(((....))).)).))))(((((((.(((((.....))))).)))))))...... ( -19.06) >consensus GAAAUGAGAUUCCACAUAUUUU________GUUGGUAUCUUGUAGGGAGAAAGUUCUAUCAGAGAACGCAAUCGAAUACUAAUUGUUUAUUU_CAUAUAAAA ..................................((.(((.((((((......)))))).)))....))................................. ( -4.08 = -3.92 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:30 2006