Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,002,873 – 12,002,966 |
Length | 93 |
Max. P | 0.890891 |
Location | 12,002,873 – 12,002,966 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.43 |
Mean single sequence MFE | -24.88 |
Consensus MFE | -20.38 |
Energy contribution | -20.62 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.82 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12002873 93 + 27905053 CAAAAUGUUUUCCAGCCGCCUGAUCUG--CGAUUCGAUUUAUGGCUUCACAAGCACUCAAUCAUUGCGUUCAAGCUUUGAUUGGCUGCUUCGAAA ........((((.(((((...((((..--......))))..)))))....(((((..((((((..((......))..))))))..))))).)))) ( -25.10) >DroSec_CAF1 108262 92 + 1 CAAAAUCUUUUCCAG---CCUGAUCUGCGCGAUUCGAUUUAUGGCUCCGCAAGCACUCAAUCAUCGCGUUCAAGCUUUGAUUGGCUGCUUCGAAA .............((---((.((((..........))))...)))).((.(((((..((((((..((......))..))))))..)))))))... ( -25.00) >DroSim_CAF1 108535 95 + 1 CAAAAUGUUUUCCAGCCGCCUGAUCUGCGCGAUUCGAUUUAUGGCUCCGCAAGCACUCAAUCAUCGCGUUCAAGCUUUGAUUGGCUGCUUCGAAA .............(((((...((((..........))))..))))).((.(((((..((((((..((......))..))))))..)))))))... ( -25.40) >DroYak_CAF1 111151 93 + 1 CAAAAUGUUUUCCAGCCGCCCGAUCUG--CGAUUCGAUUUAUGGCUCCACAAGCACUCAAUCAUUGCUUUCAAGCUUUGAUUGGCUGCUUUUAAA .............(((((...((((..--......))))..)))))....(((((..((((((..(((....)))..))))))..)))))..... ( -24.00) >consensus CAAAAUGUUUUCCAGCCGCCUGAUCUG__CGAUUCGAUUUAUGGCUCCACAAGCACUCAAUCAUCGCGUUCAAGCUUUGAUUGGCUGCUUCGAAA .................(((.((((..........))))...))).....(((((..((((((..((......))..))))))..)))))..... (-20.38 = -20.62 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:16 2006