Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,000,775 – 12,000,869 |
Length | 94 |
Max. P | 0.586464 |
Location | 12,000,775 – 12,000,869 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.28 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -17.80 |
Energy contribution | -18.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.93 |
Structure conservation index | 0.81 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12000775 94 + 27905053 ---------GCGCCUUGGACUCUUCCACCUUAAUUGUUCCACUUCUGGCUUAAUUAUUGACA--CAAUAAUUGCCUGCGGAGUAAUAACAAAUUUGAACUGGCUU ---------..(((.((((....))))......(((((..(((((.(((..((((((((...--)))))))))))...)))))...))))).........))).. ( -21.50) >DroSec_CAF1 106164 96 + 1 ---------GCGCCUUGGACUCUUCCACCUUAAUUGUUCCACUUCUGGCUUAAUUAUUGACACACAAUAAUUGCCUGCGGAGUAAUAACAAAUUUGAACUGGCUU ---------..(((.((((....))))......(((((..(((((.(((..((((((((.....)))))))))))...)))))...))))).........))).. ( -22.70) >DroSim_CAF1 106452 96 + 1 ---------GCGCCUUGGACUCUUCCACCUUAAUUGUUCCACUUCUGGCUUAAUUAUUGACACACAAUAAUUGCCUGCGGAGUAAUAACAAAUUUGAACUGGCUU ---------..(((.((((....))))......(((((..(((((.(((..((((((((.....)))))))))))...)))))...))))).........))).. ( -22.70) >DroEre_CAF1 106017 96 + 1 ---------GCGCCUUGGACUCUUCCACCUUAAUUGUUCCACUUCUGGCUUAAUUAUUGACACACAAUAAUUGCCUGCGGAGUAAUAACAAAUUUGAACUGGCUU ---------..(((.((((....))))......(((((..(((((.(((..((((((((.....)))))))))))...)))))...))))).........))).. ( -22.70) >DroYak_CAF1 108978 96 + 1 ---------GCGCCUUGGACUCUUCCACCUGAAUUGUUCCACUUCUGACUUAAUUAUUGACACACACUAAUUGCCUGCGGAGUAAUAACAAAUUUGAACUGGCUU ---------..(((.((((....))))......(((((....(((((...((((((.((.....)).))))))....)))))....))))).........))).. ( -15.70) >DroAna_CAF1 128342 103 + 1 UCGCCAAUAACGCCACCCAAUCUU--GGCUUAAUUGUUCAACUUUUGGCUUUAAUAUUGACACACGUUAAUUGUGUGUGGAGUAAUAACAAAUUUUAACAGGCUU ..(((......((((........)--))).....((((.((..((((...(((...((.(((((((.....))))))).)).)))...))))..))))))))).. ( -25.80) >consensus _________GCGCCUUGGACUCUUCCACCUUAAUUGUUCCACUUCUGGCUUAAUUAUUGACACACAAUAAUUGCCUGCGGAGUAAUAACAAAUUUGAACUGGCUU ...........(((.((((....))))......(((((..(((((.(((...(((((((.....))))))).)))...)))))...))))).........))).. (-17.80 = -18.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:15 2006