Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,995,791 – 11,995,886 |
Length | 95 |
Max. P | 0.687794 |
Location | 11,995,791 – 11,995,886 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 78.20 |
Mean single sequence MFE | -26.89 |
Consensus MFE | -18.39 |
Energy contribution | -18.20 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.29 |
Mean z-score | -1.28 |
Structure conservation index | 0.68 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11995791 95 - 27905053 GGAAGAGCACCACAAAGCCGCCAAAGAUGCUCCAGGCGGUGAGCAGAGUCAUCAAGAGAUGGCCCUCGAUCUUGUUCUGAA--AGACAUAAGUUCAG--- ....((((........((((((............))))))(((((((((((((....))))))......)).)))))....--........))))..--- ( -25.00) >DroVir_CAF1 116586 97 - 1 AGAAGAGCACCACGAAGCCACCAAAGAUGCUCCAGGCGGUUAGCAGUGACAUCAACAGGUGGCCCUCGAUUUUGUUCUGUGCAAUAGAGUAGUACAA--- ...((((((...(((.((((((...((((.((...((.....))...))))))....))))))..)))....))))))((((.........))))..--- ( -28.70) >DroGri_CAF1 113590 97 - 1 AAAAGAGCACAACAAAACCGCCAAAGAUGCUCCAGGCGGUUAGCAGCGUCAUCAACAGGUGGCCUUCGAUUUUGUUCUGCGAAAACGAUAUGCAUAA--- ......(((.((((((((((((............))))))).(.((.((((((....)))))))).)....))))).))).................--- ( -25.80) >DroEre_CAF1 101240 95 - 1 GGAAGAGCACCACAACGCCGCCAAAGAUGCUCCAGGCGGUGAGCAGGGUCAUCAAGAGGUGACCCUCGAUCUUGUUCUGCA--AUAUAUAAGUUCGG--- ....((((.......(((((((............))))))).(((((((((((....))))))))..((......))))).--........))))..--- ( -33.70) >DroMoj_CAF1 110753 96 - 1 GAAAGAGCACCACAAAGCCGCCAAAAAUGCUCCCAGCGGUAAGCAGCGUCAUUAGCAGGUGGCCUUCGAUUUUGUUCUGUGCAAAAGAG-AAUACAA--- ......((((.(((((((((((.....((((..(....)..))))((.......)).)))))).......)))))...)))).......-.......--- ( -23.61) >DroAna_CAF1 123062 91 - 1 GGAAGAGCACCACAACGCCGCCAAAGAUGCUCCAGGCGGUCAGCAGGGUCAUCAGCAAGUGGUCCUCAAUCUUGUUCUGGA--AA-------UUCAAAAA .((((((.(((((...((((((............))))))..((.((....)).))..))))).)))..(((......)))--..-------)))..... ( -24.50) >consensus GGAAGAGCACCACAAAGCCGCCAAAGAUGCUCCAGGCGGUGAGCAGCGUCAUCAACAGGUGGCCCUCGAUCUUGUUCUGCA__AAAGAUAAGUACAA___ ...((((((.......((((((............))))))..(.((.((((((....)))))).))).....))))))...................... (-18.39 = -18.20 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:14 2006