| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,995,656 – 11,995,762 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 11,995,656 – 11,995,762 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -36.88 |
| Consensus MFE | -28.24 |
| Energy contribution | -28.99 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11995656 106 + 27905053 CCCACGCCCAUACGCAAUGUGGGCGUGGGUGCCUGCAAUGUGGCCGCCGGUUUGGCCUUGAUCCUCACACCAUACCUGUCGCUACUGGUGAGUUUACCUCUUGUAG ((((((((((((.....))))))))))))...((((((.(((((.((.(((.(((...((.....))..))).))).)).))))).((((....))))..)))))) ( -45.70) >DroPse_CAF1 109390 94 + 1 CCCACGGCCAUUCGCAAUGUCGGCGUGGGCGCCUGCAACGUGGCCGCUGGAUUGGCCCUGAUCCUGACACCCUAUAUAUCGCUGCUGGUAAGCC------------ .((((((((((..(((.....((((....)))))))...))))))).)))((..((..((((...............))))..))..)).....------------ ( -29.86) >DroSec_CAF1 101103 102 + 1 CCCACGCCGAUACGCAAUGUGGGCGUGGGUGCCUGCAAUGUGGCCGCCGGCUUGGCCUUGAUCCUCACACCUUACCUGUCGCUACUGGUGAGUUUAUAUCAC---- ((((((((.(((.....))).)))))))).((..((...(((((.((.((...((...((.....))..))...)).)).)))))..))..)).........---- ( -33.00) >DroEre_CAF1 101105 106 + 1 CCCACGCCCAUACGCAAUGUGGGCGUGGGUGCCUGCAAUGUGGCCGCCGGUUUGGCCCUGAUCCUCACACCCUACCUAUCGCUCCUGGUGAGUUUUCCUCUUGCAG ((((((((((((.....))))))))))))...((((((...(((((......)))))..((..(((((...................)))))..))....)))))) ( -40.71) >DroYak_CAF1 103889 106 + 1 CCCACGCCCAUACGCAAUGUGGGCGUGGGUGCCUGCAAUGUGGCCGCCGGUUUGGCCCUGAUCCUCACCCCUUACCUAUCGCUCCUGGUGAGUUUUCCUCCUGCAC ((((((((((((.....))))))))))))....((((....(((((......)))))..((..((((((.................))))))..)).....)))). ( -40.53) >DroAna_CAF1 122932 101 + 1 CCGACGCCCAUUCGCAAUGUGGGUGUGGGUGCUUGCAACGUGGCCGCCGGACUGGCUCUUAUCCUUACACCUUACCUUUCGCUGCUGGUGAGGAUCUCU-----AA ((.((((((((.......)))))))).)).(((........))).(((.....))).............(((((((..........)))))))......-----.. ( -31.50) >consensus CCCACGCCCAUACGCAAUGUGGGCGUGGGUGCCUGCAAUGUGGCCGCCGGUUUGGCCCUGAUCCUCACACCUUACCUAUCGCUACUGGUGAGUUUACCUC_U__A_ ((((((((((((.....)))))))))))).(((........)))((((((...(((........................))).))))))................ (-28.24 = -28.99 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:13 2006