Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,988,529 – 11,988,625 |
Length | 96 |
Max. P | 0.519331 |
Location | 11,988,529 – 11,988,625 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -12.44 |
Energy contribution | -12.80 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.29 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11988529 96 + 27905053 CCCAGCCCCUCGGCACUCUCAAUUCUCUUUUC------UAUCAUGGCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACGGCUAAUUACAGCGGCAAUUUGUC ....(((.........................------..(((((..(((((((((....)))))))))...)))))..(((......))))))........ ( -19.50) >DroPse_CAF1 101390 87 + 1 ----GCCUC-----UCUCUCUGUUUCGCUCUC------UAUCAUUUCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACUGCUAAUUACAGCGACAAUUUGUC ----.....-----..((.((((...((..((------...(((...(((((((((....))))))))))))...))..)).....)))).))......... ( -15.50) >DroSec_CAF1 94027 92 + 1 ----GCCCCUCGGCACUCUCAAUUCUCUUUUC------UAUCAUGGCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACGGCUAAUUACAGCGGCAAUUUGUC ----(((.........................------..(((((..(((((((((....)))))))))...)))))..(((......))))))........ ( -19.30) >DroEre_CAF1 94054 92 + 1 ----GCCCCUUCGCACUCUCAAUUCUCUUUUC------UAUCAUGGCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACGGCUAAUUACAGCGGCAAUUUGUC ----(((.........................------..(((((..(((((((((....)))))))))...)))))..(((......))))))........ ( -19.30) >DroAna_CAF1 116109 85 + 1 -----------------UUCAUUUCUCUCCUCUGUCGCUACCGUGGCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACGGCUAAUUACAGCGACAAUUUGCG -----------------...............(((((((.((((.(((((((((((....)))))))..))))...))))........)))))))....... ( -22.50) >DroPer_CAF1 100593 87 + 1 ----GCCUC-----UCUCUCUGUUUCGCUCUC------UAUCAUUUCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACUGCUAAUUACAGCGACAAUUUGUC ----.....-----..((.((((...((..((------...(((...(((((((((....))))))))))))...))..)).....)))).))......... ( -15.50) >consensus ____GCCCC_____ACUCUCAAUUCUCUUCUC______UAUCAUGGCAUGAAAGUGAAUGCACUUUUAUAUGCAUGACGGCUAAUUACAGCGACAAUUUGUC ........................................(((((..(((((((((....)))))))))...)))))..(((......)))........... (-12.44 = -12.80 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:12 2006