Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,985,919 – 11,986,023 |
Length | 104 |
Max. P | 0.554433 |
Location | 11,985,919 – 11,986,023 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.02 |
Mean single sequence MFE | -25.39 |
Consensus MFE | -13.40 |
Energy contribution | -13.73 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.05 |
Mean z-score | -1.66 |
Structure conservation index | 0.53 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11985919 104 + 27905053 CUUGCCACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUGGAAAUUCUAAUCAAAAAGGCGCGCGACCCCACAA-UAGAGGGGUGGGACU--- ...(((..(((((((((.(.(((.(((((.(((......)))..)))))...))))...)))))))))....)))...(.(((((....-....))))).)....--- ( -31.70) >DroVir_CAF1 104721 91 + 1 -UGUCGACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUUGAAAUUGUAAUCAAAA-GGCACU------CACAA-UG----UGGAAAGC---- -((((...((((((.((...((..(((((.(((......)))..))))).....))...)).))))))...-)))).(------(((..-.)----))).....---- ( -17.20) >DroGri_CAF1 102082 90 + 1 -CAACGACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUUGAAAUUGUAAUCAA-A-GGCGCU------CUCAA-UG----UGGUAUGU---- -..((.((..((((..(((((...(((((.(((......)))..)))))....((((........))))-.-.)))))------..)))-))----).))....---- ( -22.50) >DroEre_CAF1 91386 104 + 1 CUUGCCACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUGGAAAUUCUAAUCAAAAAGGCGCGCGACCCCACAG-UAGAGGUGAUGGGUG--- ..(((.(((((((.(..((........))..).)))))))((((..(((((..(((.....))).)))))...)))))))(((((((..-.....)))..)))).--- ( -27.80) >DroMoj_CAF1 99387 95 + 1 -UAACGACUGAUUGGAAGCACAUGAAAGUAGCAAAUCAGUGCGCACUUUGAAAUUGAAAUUGUAAUCAAAA-GGCGCU------CACAG-UG----UGGCAGGGGAAA -.....(((((((....((((......)).)).)))))))((((..(((((..............))))).-.))))(------(((..-.)----)))......... ( -17.94) >DroAna_CAF1 113520 102 + 1 GCUGCCACUGAUUGGAAGCGUAUAAAAGUAGCAAAUCAGUGCUCACUUUGAAAUGGAAAUUCUAAUCAAAAAGG---GCGGUCUGGCUUCGAGAGGGGCUAAGUA--- ((((((..(((((((((.(((...(((((((((......)))).)))))...)))....))))))))).....)---))))).(((((((....)))))))....--- ( -35.20) >consensus _UUGCCACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUGGAAAUUCUAAUCAAAA_GGCGCG______CACAA_UA____UGGUAGGU____ ......(((((((.(..((........))..).)))))))((((..(((((...(......)...)))))...))))............................... (-13.40 = -13.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:10 2006