Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,973,864 – 11,973,984 |
Length | 120 |
Max. P | 0.551855 |
Location | 11,973,864 – 11,973,984 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.83 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -22.90 |
Energy contribution | -21.91 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.53 |
Mean z-score | -1.69 |
Structure conservation index | 0.63 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11973864 120 + 27905053 CAUCACAAUCGGGACGUGGGUUACUGCCAAGGUCUUAACUACAUAGCCGGCCUCCUGUUGAUCGUCACCGACGAUGAGGAGAAGUCCUUUUGGCUGCUCAAGCAUAUCGUUGAAAACAUC .....(((.(((((.((.(((((.((...((.......)).))))))).)).))))))))...((...((((((((..(((.((.((....)))).))).....))))))))...))... ( -31.70) >DroVir_CAF1 89350 120 + 1 CACCAUAAUCGCGAUGUUGGCUAUUGCCAGGGUCUGAAUUAUAUAGCUGGUCUGUUGCUCAUUGUCACGGAUGAUGAAGAGAAGUCCUUCUGGCUGCUAAAGCAUAUCGUUGAGAAAAUC ....(((((((.(((.(((((....))))).))))).))))).((((..((((((.((.....)).))))))((((...((((....)))).(((.....))).))))))))........ ( -28.90) >DroGri_CAF1 87586 120 + 1 CACCAUAAUCGUGAGAUUGGCUACUGCCAGGGUCUUAAUUAUAUAGCCGGACUACUGCUCAUUGUCACCAAAGAUGAGGAGAAGUCCUUUUGGCUGCUUAAGUAUAUAGUUGAGCAAAUU ..((..((((....))))(((....))).))(.((((((((((((((((((((.((.((((((.........)))))).)).)))))....))))((....))))))))))))))..... ( -40.80) >DroWil_CAF1 86728 120 + 1 CAUCAUAAUCGUGACGUGGGCUACUGUCAGGGUCUCAAUUAUAUAGCCGGUUUACUAUUAAUUGUCACUAACGAUGAGGAGAAAUCGUUUUGGCUGCUCAAGCAUAUUGUUGAGAACAUU ........((.(((((.(.....)))))).))(((((((.((((((((((...((.(((..((.((((....).))).))..))).)).))))))((....)))))).)))))))..... ( -29.20) >DroMoj_CAF1 85628 120 + 1 CAUCAUAAUCGAGAUGUUGGCUACUGCCAGGGUCUCAACUAUAUAGCCGGCCUGCUGCUCAUUGUCACCGAUGACGAGGAGAAGUCCUUCUGGCUGCUGAAGCAUAUCGUUGAGAAUAUA ((((........))))(((((....)))))..(((((((.((((((((((...(((.(((.((((((....)))))).))).)))....))))))((....)))))).)))))))..... ( -40.60) >DroAna_CAF1 98893 120 + 1 CACCACAACCGGGAUGUGGGCUACUGCCAAGGCCUCAACUAUAUCGCCGGUCUCCUCCUUAUCGUCACAGACGAUGAGGAGAAAUCUUUUUGGCUGCUCAAGCACAUCGUGGAGAACAUU ..((((.((((((((((((......((....)).....))))))).)))))...((((((((((((...)))))))))))).........(((((.....))).))..))))........ ( -46.10) >consensus CACCAUAAUCGGGAUGUGGGCUACUGCCAGGGUCUCAACUAUAUAGCCGGUCUACUGCUCAUUGUCACCGACGAUGAGGAGAAGUCCUUUUGGCUGCUCAAGCAUAUCGUUGAGAACAUU .....((((.......(((((....((((((((............)))((.((.((.(((((((((...))))))))).)).)).))..))))).)))))........))))........ (-22.90 = -21.91 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:09 2006