Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,964,579 – 11,964,669 |
Length | 90 |
Max. P | 0.999948 |
Location | 11,964,579 – 11,964,669 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 72.16 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -17.43 |
Energy contribution | -16.50 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.33 |
Mean z-score | -3.77 |
Structure conservation index | 0.55 |
SVM decision value | 4.77 |
SVM RNA-class probability | 0.999948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11964579 90 - 27905053 ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGGAGUUCGAGC-----UUGAGUUAGU----------GCUGAUGUGGAUGUGGAAGCGGC-------- .(((((((((((((((((..(((((.((((.(((......))).))))..)))))((-----(......)))----------...))))))))))).))))))..-------- ( -27.90) >DroSec_CAF1 68960 84 - 1 ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGAAGUUUGAGU-----UGGAGUUGAU----------GUGG------AUGUGGAAGCGGC-------- .((((((((((((((((..(((..(((((((.(..(((....)))..)..)))).))-----)..)))..))----------))))------)))).))))))..-------- ( -31.00) >DroEre_CAF1 69381 84 - 1 ACGCUCCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUACUGAUGUUAGAGCUGGAGU-----UUGAGUUGAU----------------GUGGAUGUGGAAGCGAC-------- .((((((((((((((((..(((.(((((.(..((...((....))..))..).).))-----)).)))..))----------------)))))))))).))))..-------- ( -32.70) >DroAna_CAF1 89614 113 - 1 ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGAUGUUGAUGUGGCGGCUGUGUCAGUCCCAGUGUCUAUGGAUGUGGAUGUGGAAGUGGAGUUUGCUG .(((((((((((((((((.((.((.((....((..(((((......)))))..)).(((.(((((...)))))))))).)).)).))))))))))).)))))).......... ( -35.70) >consensus ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGAAGUUGGAGU_____UUGAGUUAAU__________GUGG__GUGGAUGUGGAAGCGGC________ .((((((((((((((((..(((........)))..)))......((((..(.............)..))))..................))))))))).)))).......... (-17.43 = -16.50 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:06 2006