Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,957,591 – 11,957,683 |
Length | 92 |
Max. P | 0.578576 |
Location | 11,957,591 – 11,957,683 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 87.21 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -23.40 |
Energy contribution | -24.68 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11957591 92 + 27905053 UCUUUGGCUAACUUGGCUACUUGGCUGCUUGGCCGCUUGGCUAACUGGCCGAGUGGCAGCCUGAGCAGCUCCAACCUGAUCCACGGAGCGGA .(((.((((......(((((((((((..((((((....))))))..))))))))))))))).)))..(((((............)))))... ( -41.20) >DroSec_CAF1 62072 85 + 1 UCUUUGGCUAACUUGGCUACUUGGCUA-------ACCUGGCUAACUGGCCGACUGGCAGCCUGGGCAGCUCCAACCUGUUCCACGGAGCGGA .....((((..((((((((.((((((.-------....)))))).)))))))..)..))))((((....))))..((((((....)))))). ( -31.40) >DroSim_CAF1 62165 85 + 1 UCUUUGGCUAACUUGGCUACUUGGCUA-------ACUUGGCUAACAGGCCGACUGGCAGCCUGGGCAGCUCGAACCUGUUCCACGGUGCGGA ...((((((((.((((((....)))))-------).))))))))(((.....)))(((.(((((((((.......))).)))).)))))... ( -28.90) >DroEre_CAF1 62482 83 + 1 UCUUUGGCUAACU-GGCUACUUGGCUA--------CUUGGCUAACUGGCCGACUGGCAGCCUGGGCAGCUCCAACCUGUUCGAUGGAGCGGA ......((((..(-(((((.((((((.--------...)))))).))))))..)))).((....)).((((((.(......).))))))... ( -31.80) >DroYak_CAF1 65271 83 + 1 UCUUUGCCUAACU-GGCUACUUGGCUA--------ACUGGCAAACUGGCAAACAGGCAGCCUGGGCAGCUCCAACCUGUUCGAUGGAGCGGA ....((((((..(-((((....)))))--------...(((...(((.....)))...)))))))))((((((.(......).))))))... ( -29.70) >consensus UCUUUGGCUAACUUGGCUACUUGGCUA________CUUGGCUAACUGGCCGACUGGCAGCCUGGGCAGCUCCAACCUGUUCCACGGAGCGGA .((..((((..(.((((((.(((((((..........))))))).))))))...)..))))..))..(((((............)))))... (-23.40 = -24.68 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:02 2006