Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,956,708 – 11,956,801 |
Length | 93 |
Max. P | 0.617070 |
Location | 11,956,708 – 11,956,801 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.18 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -16.61 |
Energy contribution | -17.58 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.23 |
Mean z-score | -1.51 |
Structure conservation index | 0.73 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11956708 93 - 27905053 UCACUUUCAGCU------GACUGAAGCCGCAGCUUCCUGCCCCCUU-ACCCCUUC-----U--UCUCGCCCCCCGUCCCCUGCCCGGGUGCUCAUUAAAUGUGAAUU ((((((((((..------..))))))..((((....))))......-........-----.--....((..((((.........)))).)).........))))... ( -17.00) >DroSec_CAF1 61206 93 - 1 UCACUUUCAGCU------GGCUGAAGCCGCAGCUUCCUGCCCCUUU-ACCCCCUC-----U--GCGCACCCGCCGUCCCCUGCCCGGGGGCUCAUUAAAUGUGAAUU ((((........------(((.(((((....)))))..))).....-........-----.--(((....))).((((((.....)))))).........))))... ( -26.50) >DroSim_CAF1 61299 93 - 1 UCACUUUCAGCU------GGCUGAAGCCGCAGCUUCCUGCCCCUUU-ACCCCUUC-----U--GCACACCCGCCGUCCCCUGCCCGGGGGCUCAUUAAAUGUGAAUU ((((...(((..------((.(((((..((((....))))..))))-).))...)-----)--)..........((((((.....)))))).........))))... ( -26.10) >DroEre_CAF1 61567 93 - 1 UCACUUUCAGCU------AGCUCAAGCCGCAGCUUCCUUCCCCUUU-ACCCCUUC-----U--UCAUGCCCCCUGUCUCCUGCCCGGGGGCUCAUUAAAUGUGAAUU ((((....((((------.((.......))))))............-........-----.--....((((((.(.(....).).)))))).........))))... ( -21.70) >DroYak_CAF1 64317 93 - 1 UCACUUUCAGCU------AGCUGAAGCCGCAGCUUCCUGCCCCUUU-GCCCCUUC-----C--UCGCGCCCCCCGUCUGCUGCCCGGGGGCUCAUUAAAUGUGAAUU ((((...(((..------(((((......)))))..))).......-........-----.--..(.((((((.(.(....).).)))))).).......))))... ( -27.10) >DroAna_CAF1 81898 105 - 1 UCACUUUCAGCCAUCCACGACUCAGACCGCAGCUUCCUGCCCCGUUUGCCCCGCCCCCUUUUAGCCAAAUCGCC--CCUCCGCCCAUGGGCUCAUUAAAUGUGAAUU ((((.............((...(((((.((((....))))...)))))...)).........((((.....((.--.....)).....))))........))))... ( -17.20) >consensus UCACUUUCAGCU______GGCUGAAGCCGCAGCUUCCUGCCCCUUU_ACCCCUUC_____U__GCACACCCCCCGUCCCCUGCCCGGGGGCUCAUUAAAUGUGAAUU ((((((((((((......))))))))..((((....))))..................................((((((.....)))))).........))))... (-16.61 = -17.58 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:01 2006