Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,948,569 – 11,948,661 |
Length | 92 |
Max. P | 0.815732 |
Location | 11,948,569 – 11,948,661 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 92.15 |
Mean single sequence MFE | -35.20 |
Consensus MFE | -31.86 |
Energy contribution | -32.34 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.32 |
Structure conservation index | 0.91 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11948569 92 - 27905053 AGGGCGUGGUCCGGCAGUCGGCUGCAGUCUGUUGCAGUAGCAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAUCGGAUGAUGUCACGG-CG ..(((((.(((((((((((((((((((....))))))....((((((.....)))))).)))))))........)))))).)))))....-.. ( -37.10) >DroSec_CAF1 53036 93 - 1 AGGGCGUGGUCCGGCAGUCGGCUGCAGUCUGUUGCAGUAGUAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAACGGAUGAUGUCACGGGGG ..(((((.(((((.(((((((((((((....))))))....((((((.....)))))).))))))).........))))).)))))....... ( -37.40) >DroSim_CAF1 53144 93 - 1 AGGGCGUGGUCAGGCAGUCGGCUGCAGUCUGUUGCAGUAGCAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAACGGAUGAUGUCACGGGGG ..(((((.(((...(((((((((((((....))))))....((((((.....)))))).)))))))..(......).))).)))))....... ( -32.40) >DroEre_CAF1 53392 93 - 1 AGGGCGUGGUCCGGCAGUCGGUUGCAUUCGGUUGCAGUAGCAGAUGUAUUUUGCAGCUCCCGGCUGAAGGAAGAACGGAUGAUGUCACGGGGG ..(((((.(((((.(((((((.((((......))))((.(((((.....))))).))..))))))).........))))).)))))....... ( -34.80) >DroYak_CAF1 54284 93 - 1 AGGGCGUGGUCCAGCAGUCUGUUGCAAUCCGUUGCAGUAGCAGUUGCAUUUUGCAGCUCCCGGCUGAAGGAAAUGCGGAUGAUGUCACGGGGG ..(((((.(((((((.(.(((((((((....)))))))))).)))(((((((.((((.....))))...))))))))))).)))))....... ( -34.30) >consensus AGGGCGUGGUCCGGCAGUCGGCUGCAGUCUGUUGCAGUAGCAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAACGGAUGAUGUCACGGGGG ..(((((.(((((.(((((((((((((....))))))....((((((.....)))))).))))))).........))))).)))))....... (-31.86 = -32.34 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:00 2006