Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,947,008 – 11,947,102 |
Length | 94 |
Max. P | 0.609449 |
Location | 11,947,008 – 11,947,102 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -20.32 |
Energy contribution | -21.45 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.16 |
Mean z-score | -1.50 |
Structure conservation index | 0.67 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11947008 94 - 27905053 CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------ ..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80) >DroVir_CAF1 62445 87 - 1 UCAUCA-------------GCAGCAAUUAGCCGAGUGAAAUUCAACACUAGCAUGUGGGUCCAUUGUCCAAAUGGAGCACUCUUCGGCGGCAUCGUAAAA ......-------------...((.....((((((.((.......(((......)))(.((((((.....)))))).)..)))))))).))......... ( -23.10) >DroSec_CAF1 51503 94 - 1 CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------ ..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80) >DroSim_CAF1 51585 94 - 1 CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------ ..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80) >DroEre_CAF1 51824 94 - 1 CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------ ..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80) >DroAna_CAF1 71924 84 - 1 GCAUCAUUCAACGCCAG-CCGGGCAAUUAGCCGGGUGAAAUUCAACACUCGCCGGUGGUACCAUUGUCCAAAUGGGG---------GCCUGGCG------ ...........((((((-((((((.....))((((((........)))))))))))(((.(((((.....)))))..---------))))))))------ ( -32.00) >consensus CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG______ ...........((((...((((((.....))((((((........)))))))))).....(((((.....)))))((((......)))).))))...... (-20.32 = -21.45 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:59 2006