Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,939,454 – 11,939,554 |
Length | 100 |
Max. P | 0.742471 |
Location | 11,939,454 – 11,939,554 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -20.36 |
Energy contribution | -21.80 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11939454 100 - 27905053 UAAUAAGCAGGC----------CUUAUCUAUGGGCUAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG .........(((----------.((((..((((....((((.(((..(((((((.............)))))))...))).))))...)))).....)))))))...... ( -24.12) >DroSec_CAF1 44141 110 - 1 UAAUAACCAGGCCGUCAAUGGUCUUAUCUAUGGGCCAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG .........(((...((.((((((.......))))))((((.(((..(((((((.............)))))))...))).))))...........))...)))...... ( -26.52) >DroSim_CAF1 44105 110 - 1 UAAUAACCAGGCCGUCAAUGAUCUUAUCUAUGGGCCAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG .........(((...((.(((........((((....((((.(((..(((((((.............)))))))...))).))))...))))))).))...)))...... ( -22.32) >DroEre_CAF1 44114 110 - 1 UAAUUACCAGUCCGUCAAUGGUCUUCUCUAUGGGCUAGCUAAUAAUACCAAGACGGAACCUAACACAGUCUUGGCAUGUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG ............((..(((((.((((..(((((((((..((...((.(((((((.............))))))).)).)).))))))).....))..).)))))))).)) ( -25.32) >DroYak_CAF1 44853 110 - 1 UAAUAACCAGGCCGUCAAUGGUCUUAUCUAUGGGCUAGCUAAUAAUACCAGGACGGAACCUAACGCAGUCUUGGCAGUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG .........((((((.((((((.........((((((..((((....(((((((.............)))))))..)))).))))))))))))..)))...)))...... ( -27.82) >consensus UAAUAACCAGGCCGUCAAUGGUCUUAUCUAUGGGCUAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG ................(((((.(((((..((((....((((.(((..(((((((.............)))))))...))).))))...)))).....))))))))))... (-20.36 = -21.80 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:57 2006