| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,719,446 – 1,719,549 |
| Length | 103 |
| Max. P | 0.772352 |
| Location | 1,719,446 – 1,719,549 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.47 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.47 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1719446 103 - 27905053 UAUUUAUGGUUUGCUG------GAAAAAAGAAAACAGCCCAAGCUGGG---CCAAUAAGUUGCCGGUCUUAUUUAGUGGCCUCUUUGGAGGCU-UUAAAGUAGA----CUUUAUAAA ..(((((((((((((.------.(((.((((...((((....))))((---(.........)))..))))........(((((....))))))-))..))))))----))..))))) ( -26.90) >DroSec_CAF1 28420 102 - 1 UAUUUAUGGUUUGCUG------GAA-AAAGAAAACAGCCCAAGCUGGG---CCAAUAAGUUGCCGGGCUUAUUUAGUGGCCUCUCUGGAGGCU-UUAAAGUAGA----CUUAAUAAA ((((...((((((((.------.((-(.............(((((.((---(.........))).)))))........(((((....))))))-))..))))))----)).)))).. ( -29.30) >DroSim_CAF1 29661 102 - 1 UAUUUAUGGUUUGCUG------GAA-AAAGAAAACAGCCCAAGCUGGG---CCAAUAAGUUGCCGGGCUUAUUUAGUGGCCUCUCUGGAGGCU-UUAAAGUAGA----CUUUAUAAA ..(((((((((((((.------.((-(.............(((((.((---(.........))).)))))........(((((....))))))-))..))))))----))..))))) ( -28.60) >DroEre_CAF1 28748 82 - 1 UAUUUAUGGUUUGCAG------GGA-AA--A--ACGGCCCAAGCUG-------------------GCCUUGUUUAGUGGCCUCUCUGGAGGCC-UUAAAGCAGA----CUUUAUAAA ..((((((((((((((------((.-..--.--.((((....))))-------------------.)))).(((((.((((((....))))))-))))))))))----))..))))) ( -29.40) >DroYak_CAF1 28393 113 - 1 UAUUUAUGGUUUGAAAAUGGUAGGA-AA--AGGGCAGCACAAGCUGGCUCCCCAAUAAGUGGCCGGCCUUGUUUAGUGGCCUCUUUGGAGGCU-UUAAAGUAGACUGACUUUAUACA ..(((((.(((....))).))))).-((--((..((((((((((((((..(.......)..))))).)))))((((.((((((....))))))-))))....).))).))))..... ( -30.10) >DroAna_CAF1 25987 100 - 1 UAUUUAUGGUUUGGGC------GAGAA---AAGACCGCAGGAGCUGG----CCAAUAAGUUUUUUACUUUAUUUAGUAGCAUCUCUGGGGGUUUUUAAAGUCGA----CUAUUUAAA .....((((((..(((------...((---(((.((.(((((((((.----..(((((((.....)).)))))...)))).)).))).)).)))))...)))))----))))..... ( -22.30) >consensus UAUUUAUGGUUUGCUG______GAA_AA__AAAACAGCCCAAGCUGGG___CCAAUAAGUUGCCGGCCUUAUUUAGUGGCCUCUCUGGAGGCU_UUAAAGUAGA____CUUUAUAAA .........(((((....................((((....)))).........................(((((.((((((....)))))).))))))))))............. (-15.44 = -15.47 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:27 2006