Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 304,096 – 304,194 |
Length | 98 |
Max. P | 0.747138 |
Location | 304,096 – 304,194 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -22.23 |
Energy contribution | -21.98 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -2.14 |
Structure conservation index | 0.60 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 304096 98 - 27905053 AUUCGC--------AGCGGCAGCGUCAGUAGGCGAUGCCGAAGAGAGUCGCCGUGAAGCAACAGCCAA----CUAAAAGAGCAAAAGAGCUCACACGUGUCGG---------UGGCUAA .(((..--------..(((((.((((....)))).)))))..)))((((((((....((....))...----......((((......))))........)))---------))))).. ( -33.80) >DroSec_CAF1 39316 98 - 1 AUUCGC--------AGCGGCAGCGUCAGUAGGCGGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA----CUAAGAGAGCAGAAGAGCUCACACGUGUCGG---------CGCCUAA ....((--------..(((((.((((....)))).)))))......((((.((((..((....))...----......((((......))))...)))).)))---------))).... ( -37.80) >DroEre_CAF1 43723 107 - 1 AUUUGC--------AGUAGCAGCGGCAGCAGGCAGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA----CUAAGAGAGCAAAAGAGCUCACACGUGUCGGCUCUAGUGGCAGCUAA ......--------..((((.((....))......(((((...(((((((.((((..((....))...----......((((......))))...)))).)))))))..))))))))). ( -40.50) >DroYak_CAF1 43698 110 - 1 UUUCGCUAUGGUAUAGUAGCAGCGGCAGCAGGCGGUGCCGAAGAGAUCCGCCGCGAAGCAACAGCCAACAGACUAAGAGAGCAAAAGAGCUCACACGUGUCGG---------CGGCUAA (((((((((......)))))..(((((.(....).)))))..))))...(((((...((....)).....(((...(.((((......)))).)....))).)---------))))... ( -36.20) >consensus AUUCGC________AGCAGCAGCGGCAGCAGGCGGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA____CUAAGAGAGCAAAAGAGCUCACACGUGUCGG_________CGGCUAA .(((((...............((....)).(((((..(......)..)))))))))).....((((............((((......))))...((...))...........)))).. (-22.23 = -21.98 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006