Locus 45

Sequence ID 3R_DroMel_CAF1
Location 304,096 – 304,194
Length 98
Max. P 0.747138
window71

overview

Window 1

Location 304,096 – 304,194
Length 98
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 82.33
Mean single sequence MFE -37.08
Consensus MFE -22.23
Energy contribution -21.98
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 0.47
SVM RNA-class probability 0.747138
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 304096 98 - 27905053
AUUCGC--------AGCGGCAGCGUCAGUAGGCGAUGCCGAAGAGAGUCGCCGUGAAGCAACAGCCAA----CUAAAAGAGCAAAAGAGCUCACACGUGUCGG---------UGGCUAA
.(((..--------..(((((.((((....)))).)))))..)))((((((((....((....))...----......((((......))))........)))---------))))).. ( -33.80)
>DroSec_CAF1 39316 98 - 1
AUUCGC--------AGCGGCAGCGUCAGUAGGCGGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA----CUAAGAGAGCAGAAGAGCUCACACGUGUCGG---------CGCCUAA
....((--------..(((((.((((....)))).)))))......((((.((((..((....))...----......((((......))))...)))).)))---------))).... ( -37.80)
>DroEre_CAF1 43723 107 - 1
AUUUGC--------AGUAGCAGCGGCAGCAGGCAGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA----CUAAGAGAGCAAAAGAGCUCACACGUGUCGGCUCUAGUGGCAGCUAA
......--------..((((.((....))......(((((...(((((((.((((..((....))...----......((((......))))...)))).)))))))..))))))))). ( -40.50)
>DroYak_CAF1 43698 110 - 1
UUUCGCUAUGGUAUAGUAGCAGCGGCAGCAGGCGGUGCCGAAGAGAUCCGCCGCGAAGCAACAGCCAACAGACUAAGAGAGCAAAAGAGCUCACACGUGUCGG---------CGGCUAA
(((((((((......)))))..(((((.(....).)))))..))))...(((((...((....)).....(((...(.((((......)))).)....))).)---------))))... ( -36.20)
>consensus
AUUCGC________AGCAGCAGCGGCAGCAGGCGGUGCCGAAGAGAGCCGCCGCGAAGCAACAGCCAA____CUAAGAGAGCAAAAGAGCUCACACGUGUCGG_________CGGCUAA
.(((((...............((....)).(((((..(......)..)))))))))).....((((............((((......))))...((...))...........)))).. (-22.23 = -21.98 +  -0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006