Locus 4498

Sequence ID 3R_DroMel_CAF1
Location 11,924,284 – 11,924,379
Length 95
Max. P 0.644395
window7353

overview

Window 3

Location 11,924,284 – 11,924,379
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 93.05
Mean single sequence MFE -17.36
Consensus MFE -14.20
Energy contribution -14.40
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -1.43
Structure conservation index 0.82
SVM decision value 0.23
SVM RNA-class probability 0.644395
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11924284 95 - 27905053
UAAAGUGCCCCAUUGGCACAAAACGAGGUAAAUAACUUGCAACCCAAUCGGAAGGGAGAACAUAGCAUGCCACUUUCAAAUAAACAAAUAACGAC
....(((((.....)))))....((((........))))..........(((((((.............)).))))).................. ( -15.72)
>DroSec_CAF1 29061 95 - 1
UAAAGUGCCCCAUUGGCACAAAACGAGGUAAAUAACUUGCAAUCCAAUCGGAAGGGAGAACAUAGCAUGCCACCUCCAAAUAAACAAAUAACGAC
....(((((.....))))).....(((((.............(((....))).((.(..........).)))))))................... ( -18.10)
>DroSim_CAF1 28941 95 - 1
UAAAGUGCCCCAUUGGCACAAAACGAGGUAAAUAACUUGAAAUCCAAUCGGAAGGGAGAACAUAGCAUGCCACCUCCAAAUAAACAAAUAACGAC
....(((((.....))))).....(((((.............(((....))).((.(..........).)))))))................... ( -18.10)
>DroEre_CAF1 28850 95 - 1
UAAAGUGCCCCAUUGGCACAAAACGAGGUAAAUAACAUGCAAUCCAAUCGGAAGGGAGAACAUCGCCUGCCACUCCCGAAUAAACAAAUUAAGAC
....(((((.....))))).......................(((....))).(((((..((.....))...))))).................. ( -17.80)
>DroYak_CAF1 29243 95 - 1
UAAAGUGCCCCAUUGGCACAAAACGAGGUAAAUAACAUGCAAUCCAAUCGGAAGGGAGAACAUCGCCUGCCACCCCCAAAUAAACAAAAUAAGGC
....(((((.....))))).......(((.............(((....)))(((((.....)).))))))........................ ( -17.10)
>consensus
UAAAGUGCCCCAUUGGCACAAAACGAGGUAAAUAACUUGCAAUCCAAUCGGAAGGGAGAACAUAGCAUGCCACCUCCAAAUAAACAAAUAACGAC
....(((((.....))))).....(((((.............(((....))).((.(..........).)))))))................... (-14.20 = -14.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:51 2006