Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,921,950 – 11,922,042 |
Length | 92 |
Max. P | 0.598019 |
Location | 11,921,950 – 11,922,042 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -23.95 |
Consensus MFE | -15.12 |
Energy contribution | -16.15 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.99 |
Structure conservation index | 0.63 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11921950 92 + 27905053 AUUAGGAAAUUCUUAGAACAACAUACCUCCACGGUGACAGCCUCUCCGCUGUUCCGUAUCAUCUCAAUUAUGAUCUCCCGCGGCAGUUCCCC ..((((.....))))((((...........((((.((((((......))))))))))(((((.......)))))...........))))... ( -18.10) >DroVir_CAF1 32760 91 + 1 AUUUGAA-AAUGUGUGUGUUACGAACCUCAACGGUGACAGCAUCGCCACUGUUGCGUAUCAUCUCGAUGAUGAUCUCGCGCGAUAAGUCGCC .......-...((((.((((((...........)))))))))).((.((((((((((((((((.....))))))...))))))).))).)). ( -25.00) >DroSim_CAF1 26597 92 + 1 AUUAGGAAAUUCUAAGAACAACAUACCUCCACGGUGACAGCCUCUCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCCCGCGACAGUUCCCC .(((((....)))))((((...........((((.((((((......))))))))))((((((.....))))))...........))))... ( -22.90) >DroEre_CAF1 26506 92 + 1 AUUAGAGAAUUCUAAGAACUACAUACCUCCACGGUGACAGCCUCGCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCUCGCGACAGUUCGCC ....((((......................((((.((((((......))))))))))((((((.....)))))).))))((((....)))). ( -26.50) >DroYak_CAF1 26896 92 + 1 AUUAGGGAAUUCUAAGAACUACAUACCUCCACGGUGACAGCCUCGCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCGCGCGACAAUUCGCC ....((((......................((((.((((((......)))))))))).(((((.....)))))))))..((((....)))). ( -25.30) >DroMoj_CAF1 29431 88 + 1 GAUUGUA-AA---GUGCUUUACGUACCUCGACGGUGACAGCAUCGCCACUGUUGCGUAUCAUCUCGAUGAUGAUCUCGCGCGAUAAAUCGCC ((((((.-..---((((.....))))....))(((((.....)))))..((((((((((((((.....))))))...))))))))))))... ( -25.90) >consensus AUUAGGAAAUUCUAAGAACUACAUACCUCCACGGUGACAGCCUCGCCGCUGUUCCGUAUCAUCUCAAUGAUGAUCUCGCGCGACAAUUCGCC ..............................((((.((((((......))))))))))((((((.....)))))).....((((....)))). (-15.12 = -16.15 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006